PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G532534_P01 | ||||||||
Common Name | ZEAMMB73_396589, Zm.55850 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | GATA | ||||||||
Protein Properties | Length: 323aa MW: 35293.5 Da PI: 8.1822 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 56.5 | 3.8e-18 | 131 | 164 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C++C + +Tp+WR+gp g++tLCnaCG+++++ + GRMZM2G532534_P01 131 CTHCASEETPQWRQGPAGPSTLCNACGVRFKSGR 164 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 5.5E-15 | 125 | 175 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.899 | 125 | 161 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.43E-13 | 127 | 189 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 6.1E-14 | 129 | 162 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.24E-13 | 130 | 179 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 131 | 156 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 7.0E-16 | 131 | 164 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 323 aa Download sequence Send to blast |
MAGCGAAADE NPAAEELASG ADASLNAFFD HAGLELAAAA GGGQGADDDE EEELEWLSNM 60 DAFPSVETMS AEVEAAPSAA PPARLEPLPH ASHAVGPRTK GLRRRRRVTA PWSVPPVLPP 120 PAGSGAPRRR CTHCASEETP QWRQGPAGPS TLCNACGVRF KSGRLFPEYR PILSPTFSPL 180 LHSNSHRRVM EMRRHPVGIG WDGTEESQSW RAWEESIHGG RHVCHSTAFA FCFAWEEHTI 240 STGFCFRLPM SDEAGKSRSS STYHTRKRRR DGRLRCTVRG YMLLPRLSVA VQRFLSFFFP 300 PGTGSGDGDW QRARGRRSQV AAF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 265 | 269 | RKRRR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.86258 | 1e-179 | endosperm |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G532534 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G532534_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT018418 | 1e-177 | BT018418.1 Zea mays clone EL01N0356F04.d mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020400002.1 | 1e-137 | GATA transcription factor 4 | ||||
TrEMBL | A0A1D6PJR4 | 1e-135 | A0A1D6PJR4_MAIZE; Putative GATA transcription factor family protein | ||||
TrEMBL | A0A3L6DH64 | 1e-135 | A0A3L6DH64_MAIZE; GATA transcription factor 10 | ||||
STRING | GRMZM2G532534_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1417 | 33 | 108 | Representative plant | OGRP68 | 17 | 287 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08010.2 | 1e-30 | GATA transcription factor 11 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G532534_P01 |