PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G479980_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 358aa    MW: 39965.5 Da    PI: 6.1938
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G479980_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1631.1e-50381691128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                        + pGfrFhPtdeelv++yL++kv+gk+l++ e+ik++diyk++PwdLpk +  ++ekewyfF+ r +ky+++ r+nr+t sg+Wkatg d++
  GRMZM2G479980_P01  38 MLPGFRFHPTDEELVTFYLRRKVAGKRLTI-EIIKDFDIYKHDPWDLPKsSSISGEKEWYFFCLRGRKYRNSIRPNRVTGSGFWKATGIDRP 128
                        579***************************.89***************524445889*********************************** PP

                NAM  92 vlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        ++s+     g  +glkk+Lvfy+g+a kg+kt+W+mhe+rl
  GRMZM2G479980_P01 129 IHSAasgrAGDPIGLKKSLVFYRGSAGKGTKTEWMMHEFRL 169
                        ***977666677***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-5537196IPR003441NAC domain
PROSITE profilePS5100555.6638196IPR003441NAC domain
PfamPF023652.5E-2540169IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MAPRKEIMAG DHGGGEGEEV VVLVGDYDYE LEEEDEDMLP GFRFHPTDEE LVTFYLRRKV  60
AGKRLTIEII KDFDIYKHDP WDLPKSSSIS GEKEWYFFCL RGRKYRNSIR PNRVTGSGFW  120
KATGIDRPIH SAASGRAGDP IGLKKSLVFY RGSAGKGTKT EWMMHEFRLP PRADTAHASP  180
SEQEAEVWTI CRIFRRNFTY KKQGVHCSSK VSSAAAVVAQ PGESSSVTAG SMESDTGDEY  240
TNGLLPQTPL LQDPVNMIDG YSYSYGYDHH HHQQQQLQHG QWNSHALHAA ATAPLPSPTT  300
MAAFHHGVLS SPPAAASGPL DDMYYKDGSS WDDIGRMVME LTDPSPSVFS FYDTRSYA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-484020219171NO APICAL MERISTEM PROTEIN
1ut4_B4e-484020219171NO APICAL MERISTEM PROTEIN
1ut7_A4e-484020219171NO APICAL MERISTEM PROTEIN
1ut7_B4e-484020219171NO APICAL MERISTEM PROTEIN
3ulx_A5e-483320210174Stress-induced transcription factor NAC1
4dul_A4e-484020219171NAC domain-containing protein 19
4dul_B4e-484020219171NAC domain-containing protein 19
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G479980
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G479980_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008653606.20.0NAC transcription factor 32
TrEMBLA0A1D6HS160.0A0A1D6HS16_MAIZE; Transcription factor JUNGBRUNNEN 1
STRINGGRMZM2G479980_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119138129
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.15e-77NAC domain containing protein 42