PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G461905_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family AP2
Protein Properties Length: 1185aa    MW: 127961 Da    PI: 10.3109
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G461905_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.81.7e-103483155
                AP2  1 sgykGV.rwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                       ++y+GV r++  rg  vA+ rd      + kr +lg+f+taeeAa++++    +l+g
  GRMZM2G461905_P01 34 PRYRGVlRRC--RGWHVARTRDR-----KgKRMWLGTFDTAEEAARRYDSKTCRLRG 83
                       68****4444..44445998883.....34*******************99999998 PP
2AP244.73.4e-14182231155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        ++y+GV +++ rgr+vA+ rd      + k+ +lg+f+taeeAa++++   ++l+g
  GRMZM2G461905_P01 182 PRYRGVLRRR-RGRYVARTRDR-----KgKQMWLGTFDTAEEAARRYDSETRRLRG 231
                        68****8666.8******9993.....34*******************99888887 PP
3AP233.97.6e-11336374144
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAak 44 
                        ++y GV +++ rgr+vA+ +d   ++  kr +lg+f+taeeAa+
  GRMZM2G461905_P01 336 PRYMGVLRRR-RGRYVARTCD---RK-GKRMWLGTFDTAEEAAR 374
                        6899**7666.8******555...32.5**************98 PP
4AP229.81.5e-09588635254
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                         y+GV   + rgr+vA+ rd      + kr +lg+f+ta+eA ++++   ++l+
  GRMZM2G461905_P01 588 WYTGVL-IRCRGRYVARTRDR-----KgKRMWLGTFDTAKEAVRRYDSETRRLR 635
                        699996.5569******9993.....34******************98766665 PP
5AP2224.1e-077577921855
                AP2  18 eIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                        e   p+++  k kr +lg+f+taeeAa+++    ++l+g
  GRMZM2G461905_P01 757 E---PRTRDrKGKRMWLGTFDTAEEAARRYNSETRRLRG 792
                        5...66644456*****************9877777666 PP
6AP239.21.7e-12914963155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        ++y+ V + + rgr+vA+ rd      + kr +lg+f+taeeAa++++   ++l+g
  GRMZM2G461905_P01 914 PRYRSVLRQH-RGRYVARTRDR-----KgKRMWLGTFDTAEEAARRYDSETRRLRG 963
                        6899996555.7******9993.....34*******************99888887 PP
7AP235.52.4e-1110851126147
                AP2    1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaai 47  
                         ++y+GV +++  gr+vA+ rd        kr +lg+f+t e+Aa++++
  GRMZM2G461905_P01 1085 PRYRGVLRRR-LGRYVARTRDlK-----GKRMWLGTFDTVEDAARRYD 1126
                         68****8666.9******99944.....5******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.3E-63483IPR001471AP2/ERF domain
CDDcd000183.06E-173493No hitNo description
SMARTSM003802.4E-193597IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.2E-193592IPR001471AP2/ERF domain
PROSITE profilePS5103217.243591IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-143592IPR016177DNA-binding domain
PfamPF008479.2E-9182224IPR001471AP2/ERF domain
SMARTSM003804.3E-21183245IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-19183239IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-15183239IPR016177DNA-binding domain
PROSITE profilePS5103217.938183239IPR001471AP2/ERF domain
PRINTSPR003674.2E-5184195IPR001471AP2/ERF domain
CDDcd000182.44E-11197238No hitNo description
PRINTSPR003674.2E-5205221IPR001471AP2/ERF domain
PfamPF008473.3E-7336374IPR001471AP2/ERF domain
SMARTSM003801.3E-4337385IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.4E-11337375IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-9337375IPR016177DNA-binding domain
PROSITE profilePS5103212.299337378IPR001471AP2/ERF domain
SMARTSM003802.1E-4433479IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.8E-4446474IPR001471AP2/ERF domain
PROSITE profilePS5103214.895588644IPR001471AP2/ERF domain
SMARTSM003806.4E-11588650IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-12588645IPR016177DNA-binding domain
CDDcd000181.46E-12589644No hitNo description
Gene3DG3DSA:3.30.730.103.2E-15589645IPR001471AP2/ERF domain
SMARTSM003805.0E-5728806IPR001471AP2/ERF domain
PROSITE profilePS5103212.866740800IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.3E-11756801IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-7756800IPR016177DNA-binding domain
PfamPF008473.1E-7914956IPR001471AP2/ERF domain
CDDcd000182.32E-18914972No hitNo description
PROSITE profilePS5103217.767915971IPR001471AP2/ERF domain
SMARTSM003803.6E-20915977IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-19915972IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-14915972IPR016177DNA-binding domain
PfamPF008477.0E-710851126IPR001471AP2/ERF domain
SuperFamilySSF541714.12E-1110861137IPR016177DNA-binding domain
SMARTSM003801.7E-1410861143IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-1410861137IPR001471AP2/ERF domain
PROSITE profilePS5103214.09110861126IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0025142anatomyleaf tip
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 1185 aa     Download sequence    Send to blast
MEEHHLRCNA TTPTRRVAGG GKRKAAAVGA PAEPRYRGVL RRCRGWHVAR TRDRKGKRMW  60
LGTFDTAEEA ARRYDSKTCR LRGPSAITNF PATSDDRVPL PAPSLHAVDE HSFAADESQP  120
VVGRRDKADA GGGAEAAAEP RKFVMEIHME EHSPRYNATP PTGRVAGGGK RKAAAAGVPA  180
EPRYRGVLRR RRGRYVARTR DRKGKQMWLG TFDTAEEAAR RYDSETRRLR GPSAITNFLA  240
TSDDRVPLPA PSLHAVDEHS FTADESQPVV GSPVSTMPPQ KPSPRSPPAT RPTPVVVLKR  300
RRGREHRPCY NATSPTGRVA GGSKRKAATA GVPAEPRYMG VLRRRRGRYV ARTCDRKGKR  360
MWLGTFDTAE EAARSDEADV GGGAEASAGP CKFVMEIHME EHRPRCNATA PRGRVAGGGK  420
RKAVAVGAPA EPRYRGVLRR RRGRHFDTAE EATRRYDSET HRLCGPSAIT NFPATSDDRV  480
PLPTPALHTM DEHSFAVDES QPVVGSPVST TLPPKPVDAA AETFSMFSSS DEADVGGGVE  540
AASGPRKFVM EIHIEEHRPR CTATAPTGRV AGGGKRKATA AGAPAEPWYT GVLIRCRGRY  600
VARTRDRKGK RMWLGTFDTA KEAVRRYDSE TRRLRRPSGI TNFPMISDDR VSLLAPLLHA  660
VDEHSFAADE SQPVVGSPVS TTPPPKPVDV AAETLSTFSS SDEADAGGGA EAAAGPCKFI  720
MEIHMEEHRP CCKATAPMGR VAGGGKRKAA AASAPAEPRT RDRKGKRMWL GTFDTAEEAA  780
RRYNSETRRL RGPSVITIFP ATSDDRVPLP APSLHAMDEH YFAADESQPV VGSPASTTPP  840
PKPVDAAAET FSMFSSSDEA DAGGGAEAAA GPRKFVMEIH MEEHHPRCNA TAPTGRVVGG  900
GKRKAAVAGA PAEPRYRSVL RQHRGRYVAR TRDRKGKRMW LGTFDTAEEA ARRYDSETRR  960
LRGPSAITNF PAMSDDRVPL LAPSLQAVDE HSFAADESQP VVGSPVSTTP LVKPVDAVTE  1020
TLSTFSSSDE ADAGGGAKAA AGPCKFVMEI HMEEHRPCCN ATAPTGRVAG GGKRKAAAAG  1080
APAEPRYRGV LRRRLGRYVA RTRDLKGKRM WLGTFDTVED AARRYDSETP SAITNFPAMS  1140
DDRVPLPAPS LHAVDEHSFA VDESQPVVGS LVSTMPLPKP VDAAA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1419441KRKAVAVGAPAEPRYRGVLRRRR
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G461905
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G461905_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7277130.0KJ727713.1 Zea mays clone pUT5652 AP2-EREBP transcription factor (EREB123) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020396639.10.0AP2/ERF and B3 domain-containing protein Os05g0549800
TrEMBLA0A1D6JRM90.0A0A1D6JRM9_MAIZE; Uncharacterized protein
STRINGGRMZM2G461905_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131332332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03800.11e-15ERF domain protein 10