PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G459156_P01 | ||||||||
Common Name | ZEAMMB73_081981 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | NAC | ||||||||
Protein Properties | Length: 181aa MW: 20503.8 Da PI: 10.0385 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 107.4 | 1.7e-33 | 76 | 181 | 1 | 103 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lp+GfrF+Ptdeelv +yLk+k++g+ + i++vd+ +ePw+Lp k +++++ ew+fF++ d+ky+ g+r+nr+t++gyWkatgkd+ GRMZM2G459156_P01 76 LPVGFRFRPTDEELVLHYLKPKIAGRAHADLLLIPDVDLSACEPWELPaKaLIRSDDPEWFFFAPLDRKYPGGHRSNRSTAAGYWKATGKDR 167 79*************************888788***************5346667888********************************** PP NAM 91 evlsk.kgelvglk 103 + s+ g+l+g+k GRMZM2G459156_P01 168 LIRSRpAGTLIGVK 181 **998666667765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14370 | 4.4E-20 | 1 | 44 | IPR025834 | Topoisomerase I C-terminal domain |
Gene3D | G3DSA:1.10.132.10 | 2.0E-18 | 1 | 45 | IPR014727 | DNA topoisomerase I, catalytic core, alpha/beta subdomain |
SuperFamily | SSF56349 | 4.32E-6 | 7 | 44 | IPR011010 | DNA breaking-rejoining enzyme, catalytic core |
SuperFamily | SSF101941 | 7.06E-37 | 73 | 181 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 39.546 | 76 | 181 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-16 | 77 | 171 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006265 | Biological Process | DNA topological change | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005694 | Cellular Component | chromosome | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003917 | Molecular Function | DNA topoisomerase type I activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MEMNKKIKED LKAVALGTSK VNYFDSRITV AWCKRHEVPI EKVFFHGRII VDWWCQRAGE 60 GGTKVMQPPP QLPAALPVGF RFRPTDEELV LHYLKPKIAG RAHADLLLIP DVDLSACEPW 120 ELPAKALIRS DDPEWFFFAP LDRKYPGGHR SNRSTAAGYW KATGKDRLIR SRPAGTLIGV 180 K |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-29 | 65 | 181 | 6 | 117 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-29 | 65 | 181 | 6 | 117 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-29 | 65 | 181 | 6 | 117 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-29 | 65 | 181 | 6 | 117 | NO APICAL MERISTEM PROTEIN |
3swm_A | 7e-29 | 65 | 181 | 9 | 120 | NAC domain-containing protein 19 |
3swm_B | 7e-29 | 65 | 181 | 9 | 120 | NAC domain-containing protein 19 |
3swm_C | 7e-29 | 65 | 181 | 9 | 120 | NAC domain-containing protein 19 |
3swm_D | 7e-29 | 65 | 181 | 9 | 120 | NAC domain-containing protein 19 |
3swp_A | 7e-29 | 65 | 181 | 9 | 120 | NAC domain-containing protein 19 |
3swp_B | 7e-29 | 65 | 181 | 9 | 120 | NAC domain-containing protein 19 |
3swp_C | 7e-29 | 65 | 181 | 9 | 120 | NAC domain-containing protein 19 |
3swp_D | 7e-29 | 65 | 181 | 9 | 120 | NAC domain-containing protein 19 |
4dul_A | 7e-29 | 65 | 181 | 6 | 117 | NAC domain-containing protein 19 |
4dul_B | 7e-29 | 65 | 181 | 6 | 117 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.86221 | 0.0 | ear| endosperm| meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G459156 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Induced during normal senescence. {ECO:0000269|PubMed:18443413}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers (PubMed:17158162). Expressed in guard cells (PubMed:18443413). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:18443413}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:18443413, PubMed:24329768). Calmodulin-regulated transcriptional repressor. Binds several synthetic promoters with randomly selected binding sites (PubMed:17947243). Functions synergistically with SNI1 as negative regulator of pathogen-induced PR1 expression and basal resistance to a virulent strain of P.syringae. Binds directly to the promoter of the PR1 gene (PubMed:22826500). Acts as positive regulator of innate immunity. Involved in the effector-triggered immunity (ETI) induction of immunity-related gene expression (PubMed:24329768). Mediates osmotic stress signaling in leaf senescence by up-regulating senescence-associated genes (PubMed:18443413). {ECO:0000269|PubMed:17947243, ECO:0000269|PubMed:18443413, ECO:0000269|PubMed:22826500, ECO:0000269|PubMed:24329768}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G459156_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT067635 | 0.0 | BT067635.1 Zea mays full-length cDNA clone ZM_BFc0101L24 mRNA, complete cds. | |||
GenBank | EU953263 | 0.0 | EU953263.1 Zea mays clone 1394620 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001169690.1 | 3e-79 | uncharacterized protein LOC100383571 | ||||
Refseq | XP_008658885.1 | 3e-79 | putative NAC domain transcription factor superfamily protein isoform X1 | ||||
Swissprot | F4JN35 | 3e-44 | NTL9_ARATH; Protein NTM1-like 9 | ||||
TrEMBL | A0A3L6DB16 | 5e-78 | A0A3L6DB16_MAIZE; Protein NTM1-like 9 | ||||
STRING | GRMZM2G459156_P01 | 1e-132 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13413 | 25 | 29 | Representative plant | OGRP12749 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35580.2 | 1e-44 | NAC transcription factor-like 9 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G459156_P01 |
Publications ? help Back to Top | |||
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