PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G458728_P04 | ||||||||
Common Name | LOC103654617, ZEAMMB73_236071, Zm.24766 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | TALE | ||||||||
Protein Properties | Length: 671aa MW: 69914.6 Da PI: 6.514 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.9 | 2e-09 | 378 | 415 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + GRMZM2G458728_P04 378 FEHflHPYPKDSDKIMLAKQTGLTRSQVSNWFINARVR 415 664459******************************88 PP | |||||||
2 | BELL | 116.9 | 9.7e-38 | 239 | 310 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqe+q+kk+kLl++l+eV++rY+qy+ q+q+v ssFea+ag gsa+ Yt+lAl++iSr+FrcL+daia+q+ GRMZM2G458728_P04 239 ERQEMQMKKSKLLNMLDEVEQRYRQYHGQMQAVSSSFEAAAGAGSARTYTALALRTISRQFRCLRDAIASQV 310 79********************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.1E-58 | 159 | 308 | IPR006563 | POX domain |
Pfam | PF07526 | 7.3E-49 | 164 | 307 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 11.969 | 356 | 419 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-9 | 359 | 423 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.67E-13 | 359 | 420 | No hit | No description |
SuperFamily | SSF46689 | 3.98E-17 | 361 | 425 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.8E-29 | 362 | 425 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 2.6E-18 | 376 | 415 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009610 | Biological Process | response to symbiotic fungus | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010197 | Biological Process | polar nucleus fusion | ||||
GO:0010201 | Biological Process | response to continuous far red light stimulus by the high-irradiance response system | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 671 aa Download sequence Send to blast |
MAAYYHGGAG TDIQASTDGL QTLYLMNPSY AGGYADDGGA STPGAANMML LNSAVTTMTP 60 ASFAHHHQQQ SPPAAQQHFV GIPLQVQAPP PSGYNLWTPA MAGGAADMSP QAQAQTPGAA 120 GAAGVSAVLS LSSREAPPVT VAAVAACTDE GKYLGVSATP QGQMVMSSKY LKAAQELLDE 180 VVSVSKGVED AKTAAAAATK SLAAVKKKED SEGASGGGTD DGAGAKSGGG AAPEMSTAER 240 QEMQMKKSKL LNMLDEVEQR YRQYHGQMQA VSSSFEAAAG AGSARTYTAL ALRTISRQFR 300 CLRDAIASQV RAASRALGED ADAAVAGGRT VGSRLRYIDH QLRQQRALQQ LGMMQGGAWR 360 PQRGLPERSV SILRAWLFEH FLHPYPKDSD KIMLAKQTGL TRSQVSNWFI NARVRLWKPM 420 VEEMYLEETK DQDAGGGGND EGKSGGGGSK SSDTVDGVMP RADVMSKSAV RVGGGGAGAE 480 SASTNKGIHG SSLLELGGGD HQQSHAGFYD DDEDDGDDVM GRRLKKARGN EPAPAFHHVH 540 DIATLHAQAA AAARQQHEEV SHRELLMKFM ESGGGGGVRD HHQDGGGYSL FAPGPYGQFT 600 TEPFAFAGNG GVSLTLGLPH GAGGSAEQTA SFLMGSTTAG DSGSHGAATS YDMNMQSTKS 660 FAAQLMRDFV A |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrm_A | 3e-17 | 365 | 423 | 5 | 63 | Homeobox protein Meis2 |
4xrm_B | 3e-17 | 365 | 423 | 5 | 63 | Homeobox protein Meis2 |
5bng_A | 2e-17 | 365 | 423 | 1 | 59 | Homeobox protein Meis2 |
5bng_B | 2e-17 | 365 | 423 | 1 | 59 | Homeobox protein Meis2 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.24766 | 0.0 | aerial organ| embryo| endosperm| meristem| ovary| sheath |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G458728 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G458728_P04 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT086092 | 0.0 | BT086092.2 Zea mays full-length cDNA clone ZM_BFc0115J14 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001344816.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_008679683.1 | 0.0 | BEL1-like homeodomain protein 1 isoform X1 | ||||
Refseq | XP_008679685.1 | 0.0 | BEL1-like homeodomain protein 1 isoform X1 | ||||
Refseq | XP_020408426.1 | 0.0 | BEL1-like homeodomain protein 1 isoform X1 | ||||
Swissprot | Q9SJ56 | 1e-110 | BLH1_ARATH; BEL1-like homeodomain protein 1 | ||||
TrEMBL | K7UPH8 | 0.0 | K7UPH8_MAIZE; Putative POX domain/homeobox DNA-binding domain family protein | ||||
STRING | GRMZM2G458728_P04 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35940.3 | 2e-78 | BEL1-like homeodomain 1 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G458728_P04 |
Entrez Gene | 103654617 |
Publications ? help Back to Top | |||
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