PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G458728_P01
Common NameZEAMMB73_236071, Zm.24766
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family TALE
Protein Properties Length: 635aa    MW: 66172.5 Da    PI: 6.3621
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G458728_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox291.8e-093423791954
                        HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                        Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  GRMZM2G458728_P01 342 FEHflHPYPKDSDKIMLAKQTGLTRSQVSNWFINARVR 379
                        664459******************************88 PP
2BELL85.94.6e-28239301163
               BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrc 63 
                        erqe+q+kk+kLl++l+eV++rY+qy+ q+q+v ssFea+ag gsa+ Yt+lAl+++    r 
  GRMZM2G458728_P01 239 ERQEMQMKKSKLLNMLDEVEQRYRQYHGQMQAVSSSFEAAAGAGSARTYTALALRTVGSRLRY 301
                        79******************************************************9877665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.0E-41159304IPR006563POX domain
PfamPF075264.0E-40164299IPR006563POX domain
PROSITE profilePS5007111.969320383IPR001356Homeobox domain
SMARTSM003891.2E-9323387IPR001356Homeobox domain
CDDcd000863.33E-13323384No hitNo description
SuperFamilySSF466893.72E-17325389IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.3E-29326389IPR009057Homeodomain-like
PfamPF059202.4E-18340379IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009610Biological Processresponse to symbiotic fungus
GO:0009737Biological Processresponse to abscisic acid
GO:0010197Biological Processpolar nucleus fusion
GO:0010201Biological Processresponse to continuous far red light stimulus by the high-irradiance response system
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 635 aa     Download sequence    Send to blast
MAAYYHGGAG TDIQASTDGL QTLYLMNPSY AGGYADDGGA STPGAANMML LNSAVTTMTP  60
ASFAHHHQQQ SPPAAQQHFV GIPLQVQAPP PSGYNLWTPA MAGGAADMSP QAQAQTPGAA  120
GAAGVSAVLS LSSREAPPVT VAAVAACTDE GKYLGVSATP QGQMVMSSKY LKAAQELLDE  180
VVSVSKGVED AKTAAAAATK SLAAVKKKED SEGASGGGTD DGAGAKSGGG AAPEMSTAER  240
QEMQMKKSKL LNMLDEVEQR YRQYHGQMQA VSSSFEAAAG AGSARTYTAL ALRTVGSRLR  300
YIDHQLRQQR ALQQLGMMQG GAWRPQRGLP ERSVSILRAW LFEHFLHPYP KDSDKIMLAK  360
QTGLTRSQVS NWFINARVRL WKPMVEEMYL EETKDQDAGG GGNDEGKSGG GGSKSSDTVD  420
GVMPRADVMS KSAVRVGGGG AGAESASTNK GIHGSSLLEL GGGDHQQSHA GFYDDDEDDG  480
DDVMGRRLKK ARGNEPAPAF HHVHDIATLH AQAAAAARQQ HEEVSHRELL MKFMESGGGG  540
GVRDHHQDGG GYSLFAPGPY GQFTTEPFAF AGNGGVSLTL GLPHGAGGSA EQTASFLMGS  600
TTAGDSGSHG AATSYDMNMQ STKSFAAQLM RDFVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A3e-17329387563Homeobox protein Meis2
4xrm_B3e-17329387563Homeobox protein Meis2
5bng_A2e-17329387159Homeobox protein Meis2
5bng_B2e-17329387159Homeobox protein Meis2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.247660.0aerial organ| embryo| endosperm| meristem| ovary| sheath
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G458728
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G458728_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0860920.0BT086092.2 Zea mays full-length cDNA clone ZM_BFc0115J14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001344816.10.0BEL1-like homeodomain protein 1
RefseqXP_008679683.10.0BEL1-like homeodomain protein 1 isoform X1
RefseqXP_008679685.10.0BEL1-like homeodomain protein 1 isoform X1
RefseqXP_020408426.10.0BEL1-like homeodomain protein 1 isoform X1
SwissprotQ9SJ561e-89BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLK7UPH80.0K7UPH8_MAIZE; Putative POX domain/homeobox DNA-binding domain family protein
STRINGGRMZM2G458728_P040.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.33e-58BEL1-like homeodomain 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]