PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G438438_P02 | ||||||||
Common Name | LOC100279540 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | ZF-HD | ||||||||
Protein Properties | Length: 253aa MW: 26000.2 Da PI: 7.1323 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 107.2 | 9.3e-34 | 37 | 93 | 2 | 57 |
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrev 57 ++v Y+eClkNhAaslGgha+DGCgEfmps++++ +++++l+CaACgCHRnFHRr + GRMZM2G438438_P02 37 TGVYYRECLKNHAASLGGHALDGCGEFMPSPEADpADPSSLRCAACGCHRNFHRRLP 93 5789******************************9*******************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 2.7E-28 | 39 | 92 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 2.7E-30 | 41 | 91 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 1.0E-15 | 41 | 91 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 28.068 | 41 | 92 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MEAVVDLKYL PVFPNGGVAA AKKKTRLGAA AVAGGQTGVY YRECLKNHAA SLGGHALDGC 60 GEFMPSPEAD PADPSSLRCA ACGCHRNFHR RLPELSPPPP LLALPPPPPP LAPAPAPAVA 120 SHAMRDSRTM RGEEAPDDRL PAAFDDDTEE SDKGVFKVWM HNNKHNFVGG HSARRSASAS 180 AATAIHHPFI DAAPVCPSSH AAPAPAAAVH LSAPAPAASP ATPVLADSNI NGNAADYFRV 240 QPSTASGGSP QSS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.78427 | 0.0 | ear| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G438438 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G438438_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT039408 | 0.0 | BT039408.1 Zea mays full-length cDNA clone ZM_BFc0012J06 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001146009.1 | 1e-78 | ZF-HD homeobox protein | ||||
Swissprot | Q6ER21 | 4e-34 | ZHD9_ORYSJ; Zinc-finger homeodomain protein 9 | ||||
TrEMBL | B4FQM0 | 1e-180 | B4FQM0_MAIZE; Uncharacterized protein | ||||
STRING | GRMZM2G438438_P01 | 5e-78 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69600.1 | 4e-21 | zinc finger homeodomain 1 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G438438_P02 |