PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G437460_P02
Common Namepco123854
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ARF
Protein Properties Length: 698aa    MW: 77011.7 Da    PI: 7.1852
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G437460_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.14e-24147248199
                        EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                        f+k+lt sd++++g +++p++ ae++      + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F   +
  GRMZM2G437460_P02 147 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyS-QQRPSQELVAKDLHGTEWKFRHIYRGQPRRHLLTTGWSAFVNRKKLISGDAVLFL--R 235
                        99****************************963.3445679************************************************..3 PP

                        SSEE..EEEEE-S CS
                 B3  87 rsefelvvkvfrk 99 
                         +++ l+++v+r+
  GRMZM2G437460_P02 236 GEDGVLRLGVRRA 248
                        4899899999986 PP
2Auxin_resp103.52.5e-34273353182
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                        +a+a++tk+vF+++YnPr ++seF+v+++k+ +++++++svGmR +m++e++d+serr++G+++g +++dp  W +SkW++L
  GRMZM2G437460_P02 273 VAQAVATKTVFHIYYNPRLTQSEFIVPYWKFTRSFNQPISVGMRCRMRYESDDASERRCTGIIIGSREADP-IWYGSKWKCL 353
                        6899*******************************************************************.8********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.24E-42141249IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.9E-40143256IPR015300DNA-binding pseudobarrel domain
CDDcd100171.55E-22145247No hitNo description
PfamPF023626.6E-22147248IPR003340B3 DNA binding domain
SMARTSM010195.1E-23147249IPR003340B3 DNA binding domain
PROSITE profilePS5086313.225147249IPR003340B3 DNA binding domain
PfamPF065071.3E-29273353IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 698 aa     Download sequence    Send to blast
MAGIDLNTVE EEDEEEAEAL PLPGPGGRGA VCLELWHACA GPVPPLPRKG SAVVYLPQGH  60
LEHIGGDAAR GAAASAVPPH VLCRVVDVTL HADGATDEVY ARVSLLPEDE DAEKRAQAQA  120
RVREDEDRRD GEDGGAMRPL ARTPHMFCKT LTASDTSTHG GFSVPRRAAE DCFPPLDYSQ  180
QRPSQELVAK DLHGTEWKFR HIYRGQPRRH LLTTGWSAFV NRKKLISGDA VLFLRGEDGV  240
LRLGVRRAAQ LKIVTPIPAP HNQCSSNSNL GNVAQAVATK TVFHIYYNPR LTQSEFIVPY  300
WKFTRSFNQP ISVGMRCRMR YESDDASERR CTGIIIGSRE ADPIWYGSKW KCLVVRWDDG  360
IECRWPNRVS PWEIELTGSV SGSQMCAPSS KRLKPCLPQV NPEIVLPNGS VSSDFAGSAR  420
FHKVLQGQEL LGFKTHDGPA ISASQATEAR NLQYSDERSN NNLGIPRLGV RSPTGIPGFP  480
YHCSGFGESQ RFQKVLQGQE VFHPFRGGCL ADGHIRTAGM YQPDGRHVSG AAYKWSAPQG  540
YDFPQPAKPV FLLQESSPSS VMMFPQTRSK ITHLEYEYSR HEDGRLDRTV PTQDMGRSNQ  600
TLSLWPHLVS GEAIEECTGT VNMHSPVSGA EHESNNESTV ENGCKIFGIS LAEKIRSCDE  660
ADSCSAKCNS RLQPLKSQMP KSLGSCWATV SALYYLFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldx_A1e-1102538611363Auxin response factor 1
4ldx_B1e-1102538611363Auxin response factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.122340.0aerial organ| aleurone| ear| embryo| endosperm| meristem| root| sheath| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G437460
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G437460_P02
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under dark condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0690050.0BT069005.1 Zea mays full-length cDNA clone ZM_BFb0119L19 mRNA, complete cds.
GenBankJX4285080.0JX428508.1 Zea mays subsp. mays clone pUT3106 ARF12 ARF type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001170123.10.0uncharacterized protein LOC100384045
SwissprotQ0JKI90.0ARFB_ORYSJ; Auxin response factor 2
TrEMBLC0PL360.0C0PL36_MAIZE; Auxin response factor
TrEMBLK0D9R50.0K0D9R5_MAIZE; Auxin response factor (Fragment)
STRINGGRMZM2G437460_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-155ARF family protein
Publications ? help Back to Top
  1. Khanday I,Yadav SR,Vijayraghavan U
    Rice LHS1/OsMADS1 controls floret meristem specification by coordinated regulation of transcription factors and hormone signaling pathways.
    Plant Physiol., 2013. 161(4): p. 1970-83
    [PMID:23449645]