PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G431157_P01
Common NameZEAMMB73_418273, Zm.22238
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 1142aa    MW: 127259 Da    PI: 8.3508
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G431157_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.0001810231046122
                         EEET..TTTEEESSHHHHHHHHHH CS
            zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt 22  
                         ++C    C++sFs++++L  H r 
  GRMZM2G431157_P01 1023 FSCDieGCDMSFSTQHDLSLHKRD 1046
                         899999***************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5118416.547191IPR003347JmjC domain
PfamPF023734.6E-181674IPR003347JmjC domain
SuperFamilySSF511971.13E-112297No hitNo description
SMARTSM003551110231045IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.23E-510341083No hitNo description
SMARTSM003551510461070IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.88710461075IPR007087Zinc finger, C2H2
PROSITE patternPS00028010481070IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.0E-910731100IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.004510761100IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.5110761105IPR007087Zinc finger, C2H2
PROSITE patternPS00028010781100IPR007087Zinc finger, C2H2
SuperFamilySSF576673.38E-910861130No hitNo description
Gene3DG3DSA:3.30.160.602.4E-911011129IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.28411061137IPR007087Zinc finger, C2H2
SMARTSM003551.111061132IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028011081132IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006354anatomyear floret
PO:0008018anatomytransition vascular leaf
PO:0009025anatomyvascular leaf
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0020040anatomyleaf base
PO:0020126anatomytassel inflorescence
PO:0025142anatomyleaf tip
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 1142 aa     Download sequence    Send to blast
MVPKGRRQGQ QRQPNVAFQI LNEKTTVLSP EVLLSAGVPC CRLVQNPGEF VITFPGAYHS  60
GFSHGFNCGE ATNIATPCWL QVAKEAAIRR ASTNSGPMVS HYQLLYELAL SLHLREPKNS  120
HMPRSSRLRD KKKNEGERMI KETFVGSVIE NNSFLSTLLD KSSCIIIPEI EFPLPSVPTT  180
RAPEVSDKQG LIAGPCSISQ QKAEETLVYG DEIDEIKEVE NMSESTTSSA CNQRKFYETK  240
FGIVSSTAFC LSTSDIQIGV IGKGRSHQGG GLLDQGRLPC VQCGILSYAC VAIIQPKEAA  300
VQYVISRECM SSSAIHREIM ESDDTSNRMV IAHQQGYAHQ TDDNTIQNVS AAQVSDRCRQ  360
LYSSSTHGCT SALGLLASAY ESSESDEEAD APNNISNNCE NNNAANGATN IQSSRTSVQD  420
ENTNLQLYEE ENNSRAIASL MQPVEDKSTA MTPVSMETNI IHLADQGESL TFHEQWHAYL  480
DFDDLTASGV KASPNTSLGT AKAAMKTDAL TLFKYSKDSC RMHVFCLEHA LETWTRLEQI  540
GGANIMLLCH PEYPRAESAA KVIAEELGMK HAWKDITFKK ATREDTGRIQ LALQDEDAEP  600
TSSDWAVKMG INIYYSAKQS KSPLYSKQVP YNSIIYKAFA QENPDSFADG QRSSTTKKKV  660
AGWWCGKKWM SNQVHPLLAC EQVEQNHETV YSKTMLSASC DRMQEQSTRS TTLINQNSSK  720
KITRRKEGDS VEKSRGKKKR CSASASDEAA LHCSVYDQPV NSDNHAKYED GDESVEARNT  780
RHHQQYESLN KKSSLKRRKD NNRSNSFHEL HKDNVDIDCR FDTDGTENTS IGDWDNSPPQ  840
GGDVKAVKSG ARLLGTKRFS KEKGSNGLSN VNKKLVKMGK KISTKKQKND KTNRQFQENH  900
KKADIVDLLH EDDGDEGTYI DCNEIRKQKT DDVRVKSRGK MQSGKKKVSR CQASDGSHNG  960
GKEMKLSSDI EVCNRRGDGT TAANFEEIPK EKADAVKVKP KMQGDKKKTS KHQAGDGDKG  1020
AKFSCDIEGC DMSFSTQHDL SLHKRDICPV KGCKKKFFCH KYLLQHRKVH LDERPLMCSF  1080
PGCAKTFKWP WARTEHMRVH TGVRPYACTE PGCTQTFRFV SDFSRHKRKT GHSCDKKKKR  1140
GL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A2e-531021114021140Lysine-specific demethylase REF6
6a58_A2e-531021114021140Lysine-specific demethylase REF6
6a59_A2e-531021114021140Lysine-specific demethylase REF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1723739RRKEGDSVEKSRGKKKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.222380.0ear| meristem| sheath| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G431157
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves and flag leaves. Expressed at low levels in roots, shoots, stems and panicles. {ECO:0000269|PubMed:24280387}.
Functional Description ? help Back to Top
Source Description
UniProtHistone demethylase that demethylates 'Lys-27' (H3K27me) of histone H3 with a specific activity for H3K27me3 and H3K27me2. No activity on H3K4me3, H3K9me3, H3K27me1 and H3K36me3. Involved in biotic stress response. May demethylate H3K27me3-marked defense-related genes and increase their basal and induced expression levels during pathogen infection. {ECO:0000269|PubMed:24280387}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G431157_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress, abscisic acid (ABA), jasmonic acid (JA), the ethylene precursor ACC and infection by the bacterial pathogen Xanthomonas oryzae pv. oryzae. {ECO:0000269|PubMed:24280387}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9466830.0EU946683.1 Zea mays clone 322288 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020401162.10.0lysine-specific demethylase JMJ705
SwissprotQ5N7122e-71JM705_ORYSJ; Lysine-specific demethylase JMJ705
TrEMBLA0A1D6IVJ90.0A0A1D6IVJ9_MAIZE; Lysine-specific demethylase REF6
STRINGGRMZM2G431157_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67183035
Representative plantOGRP1475934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.18e-67relative of early flowering 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]