PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G430522_P01 | ||||||||
Common Name | si606070e08, Zm.4437 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | NAC | ||||||||
Protein Properties | Length: 422aa MW: 46650.6 Da PI: 7.7678 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167.2 | 5.4e-52 | 116 | 243 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtdeelv++yL++kv + + i+evd++++ePw+Lp +++ +e+ewyfFs rd+ky+tg r+nrat +gyWkatgkd+ev GRMZM2G430522_P01 116 LPPGFRFHPTDEELVTFYLAAKVFNGACCG-IDIAEVDLNRCEPWELPDAARMGEREWYFFSLRDRKYPTGLRTNRATGAGYWKATGKDREV 206 79************************9777.56***************8888899************************************* PP NAM 93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 l++ +g+l g+kktLvfykgrap+gekt+Wv+heyrl GRMZM2G430522_P01 207 LNAaTGALLGMKKTLVFYKGRAPRGEKTKWVLHEYRL 243 *9878899***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.75E-62 | 106 | 266 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.928 | 116 | 266 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.8E-27 | 117 | 243 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010014 | Biological Process | meristem initiation | ||||
GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0006310 | anatomy | tassel floret | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006341 | anatomy | primary shoot system | ||||
PO:0006354 | anatomy | ear floret | ||||
PO:0006505 | anatomy | central spike of ear inflorescence | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0009066 | anatomy | anther | ||||
PO:0009074 | anatomy | style | ||||
PO:0009084 | anatomy | pericarp | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020104 | anatomy | leaf sheath | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0020148 | anatomy | shoot apical meristem | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0025287 | anatomy | seedling coleoptile | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0001094 | developmental stage | plant embryo coleoptilar stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage | ||||
PO:0007015 | developmental stage | radicle emergence stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007022 | developmental stage | seed imbibition stage | ||||
PO:0007026 | developmental stage | FL.00 first flower(s) open stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007045 | developmental stage | coleoptile emergence stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007094 | developmental stage | LP.01 one leaf visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007104 | developmental stage | LP.15 fifteen leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007112 | developmental stage | 1 main shoot growth stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage | ||||
PO:0021004 | developmental stage | inflorescence initiation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 422 aa Download sequence Send to blast |
MVLWRTGGAW WCYLARAPHY KAPPHTIPQL RASSHHLVER KSESEVGKGI GFLVDQIPFP 60 SWILIFLLRS HQIDLTTCLR SKPLCMHHHH QDQAMGDALW DLLGEEMAAA GGEHGLPPGF 120 RFHPTDEELV TFYLAAKVFN GACCGIDIAE VDLNRCEPWE LPDAARMGER EWYFFSLRDR 180 KYPTGLRTNR ATGAGYWKAT GKDREVLNAA TGALLGMKKT LVFYKGRAPR GEKTKWVLHE 240 YRLDGDFAAA RRPCKEEWVI CRILHKAGDQ YSKLMMVKSP YYLPMAMDPS SFCFQEDPTG 300 HPLPNPSGCT PFHHGHPHHS MQPPPPLPPS NHAGKAVFTG AAAACCMQQE PADGSNSAVL 360 PMPPFPPFTP IVAGKPAAPA PPPQVVNAGP QEPPPPTWLE AYLQHTGGIL YEMGPTAAPR 420 GA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-46 | 116 | 266 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-46 | 116 | 266 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-46 | 116 | 266 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-46 | 116 | 266 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
4dul_A | 1e-46 | 116 | 266 | 17 | 165 | NAC domain-containing protein 19 |
4dul_B | 1e-46 | 116 | 266 | 17 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.4437 | 0.0 | ear| meristem| shoot| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G430522 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00241 | DAP | Transfer from AT1G76420 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G430522_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT061270 | 0.0 | BT061270.1 Zea mays full-length cDNA clone ZM_BFb0128J16 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008663646.1 | 0.0 | protein CUP-SHAPED COTYLEDON 1 isoform X1 | ||||
TrEMBL | A0A1D6KIZ7 | 0.0 | A0A1D6KIZ7_MAIZE; Protein CUP-SHAPED COTYLEDON 3 | ||||
STRING | GRMZM2G430522_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11237 | 33 | 41 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76420.1 | 2e-85 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G430522_P01 |
Entrez Gene | 606438 |
Publications ? help Back to Top | |||
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