PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G419239_P01 | ||||||||
Common Name | ZEAMMB73_007147, Zm.9667 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | MYB | ||||||||
Protein Properties | Length: 260aa MW: 28255.1 Da PI: 8.033 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.4 | 1.6e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEde+lv +v+ +G g+W++ +r g+ R++k+c++rw +yl GRMZM2G419239_P01 14 RGAWTKEEDERLVAYVRAHGEGCWRSLPRAAGLLRCGKSCRLRWINYL 61 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 57.6 | 3e-18 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T++Ed+l+v+++ +lG++ W++Ia++++ gRt++++k++w+++ GRMZM2G419239_P01 67 RGNFTADEDDLIVKLHSLLGNK-WSLIAARLP-GRTDNEIKNYWNTH 111 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.6E-24 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.426 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.35E-29 | 13 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.8E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.05E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 28.143 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-27 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.6E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-16 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.25E-12 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:1900384 | Biological Process | regulation of flavonol biosynthetic process | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MGRSPCCEKA HTNRGAWTKE EDERLVAYVR AHGEGCWRSL PRAAGLLRCG KSCRLRWINY 60 LRPDLKRGNF TADEDDLIVK LHSLLGNKWS LIAARLPGRT DNEIKNYWNT HIRRKLLGSG 120 IDPVTHRRVA GGAATTISFQ PSPNTAVAAA AETAAQAPIK AEETAAVKAP RCPDLNLDLC 180 ISPPCQHEDD GEEEEEELDL IKPAVVKREA LQAGHGHGHG LCLGCGLGGQ KGAAGCSCSN 240 GHHFLGLRTS VLDFRGLEMK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 7e-28 | 13 | 116 | 26 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.9667 | 0.0 | meristem| root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G419239 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that regulates negatively genes involved in anthocyanin biosynthesis. {ECO:0000269|PubMed:7920701}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G419239_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ244413 | 0.0 | DQ244413.1 Zea mays clone 7309 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001106009.2 | 0.0 | transcription factor MYB42 | ||||
Swissprot | P20025 | 1e-129 | MYB38_MAIZE; Myb-related protein Zm38 | ||||
TrEMBL | A0A3L6F1R1 | 0.0 | A0A3L6F1R1_MAIZE; Myb-related protein Zm38 | ||||
TrEMBL | K7UPS5 | 0.0 | K7UPS5_MAIZE; Myb transcription factor 42 | ||||
STRING | GRMZM2G419239_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16720.1 | 4e-94 | myb domain protein 7 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G419239_P01 |
Entrez Gene | 100101513 |
Publications ? help Back to Top | |||
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