PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G417574_P01 | ||||||||
Common Name | Zm.145235 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | C2H2 | ||||||||
Protein Properties | Length: 147aa MW: 15372.4 Da PI: 8.2471 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.6 | 9.2e-05 | 39 | 61 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C++C + F ++ L H++ H GRMZM2G417574_P01 39 YACHYCRRQFYSSQALGGHQNAH 61 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.25E-6 | 37 | 67 | No hit | No description |
PROSITE profile | PS50157 | 11.323 | 39 | 66 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 41 | 61 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 147 aa Download sequence Send to blast |
MVGMGGARPN AAQLPVVVVP DVARRPPSAA AESEPPQLYA CHYCRRQFYS SQALGGHQNA 60 HKRERTLARH RGGGGGAPFA VVHGAFVQAA PAPVTEWDDD ARSGQAPPVV VVVAAGQRLF 120 TGGYVDDSPG VGVGQDELPK LDLTLKL |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G417574 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G417574_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004087 | 3e-41 | AP004087.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1297_C09. | |||
GenBank | AP014958 | 3e-41 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012610 | 3e-41 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. | |||
GenBank | CT835407 | 3e-41 | CT835407.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA122P15, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021316037.1 | 1e-50 | uncharacterized protein LOC110435049 | ||||
TrEMBL | A0A1D6H2L8 | 6e-75 | A0A1D6H2L8_MAIZE; Zinc finger protein 2 | ||||
STRING | GRMZM2G417574_P01 | 1e-102 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP183 | 36 | 274 | Representative plant | OGRP82 | 15 | 137 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G24625.1 | 2e-14 | zinc finger protein 7 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G417574_P01 |