PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G402156_P01
Common NameLOC103638007, ZEAMMB73_543918
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 290aa    MW: 33264.6 Da    PI: 9.7056
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G402156_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.54.1e-10133178247
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          WT +E+  ++ + + +G  +Wk I++++ ++Rt+ q+ s+ qky
  GRMZM2G402156_P01 133 RFWTIDEHRNFLYGLRAYGRSDWKNISKHFVTTRTPMQISSHAQKY 178
                        56*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.0E-9125180IPR009057Homeodomain-like
PROSITE profilePS5129414.175127183IPR017930Myb domain
SuperFamilySSF466892.17E-15129184IPR009057Homeodomain-like
SMARTSM007173.9E-8131181IPR001005SANT/Myb domain
TIGRFAMsTIGR015572.0E-13132181IPR006447Myb domain, plants
CDDcd001672.14E-7135179No hitNo description
PfamPF002494.9E-7135178IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MDPNYGEWNF SEIKIAKALI ASHNAKSSYS SDMNNKQTDI IDMLQARFPT KEKHKVTKLY  60
VDLMLEKMQM ILSGNQHATM GKKLVNDKFG MSIEDPAIDF MGGDLVEKRT AKRKAREDMN  120
THLDSQKERR YRRFWTIDEH RNFLYGLRAY GRSDWKNISK HFVTTRTPMQ ISSHAQKYFH  180
RMENIARRQR SSINDIVLHD DEPRVQSNDS SLQRFTFTSG TYNPNHYGSS SQFVAMSNIA  240
KHMWFPSVCC IDQESTSNNQ ITTLDRGGSG GSCVALEVQG VGSKAKLISD
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G402156
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G402156_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008659228.10.0myb-like protein I
TrEMBLA0A3L6DDZ90.0A0A3L6DDZ9_MAIZE; Transcription factor KUA1
TrEMBLK7VE710.0K7VE71_MAIZE; Putative MYB DNA-binding domain superfamily protein
STRINGGRMZM2G402156_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84230133
Representative plantOGRP2767530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.19e-23MYB_related family protein