PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G400489_P02
Common NameLOC100283600, ZEAMMB73_789233
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 460aa    MW: 49662 Da    PI: 9.393
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G400489_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.65.8e-13204248347
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        +WT+eE+  ++ + ++lG+g+W+ I+r +   Rt+ q+ s+ qky
  GRMZM2G400489_P02 204 PWTEEEHRMFLMGLQKLGKGDWRGISRNFVVSRTPTQVASHAQKY 248
                        8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.60.104.6E-491114IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129418.757197253IPR017930Myb domain
SuperFamilySSF466892.47E-16199253IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-18200252IPR006447Myb domain, plants
SMARTSM007175.5E-11201251IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.2E-12201247IPR009057Homeodomain-like
PfamPF002491.6E-10204248IPR001005SANT/Myb domain
CDDcd001677.60E-9204249No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MEMASLIAGR VVALHRSLPP PVEGTVADII VISSRPVLLN TPKYHLLGKR SEESEIQSTR  60
RRIWNAPARR TYEAHASAHV PEPSPRAGAP PERMTRRCSH CSNNGHNSRT CPVRSAGGGS  120
GGGGVRLFGV RLTTAPAPAV MKKSASMSCI VSSLGGGFGG SSPPVEGVGA GRGGEDSGTG  180
YVSDDPAHAS CSTNGRAERK KGTPWTEEEH RMFLMGLQKL GKGDWRGISR NFVVSRTPTQ  240
VASHAQKYFV RQTNSSRRKR RSSLFDMVPE MPMDESPAAV EQFTLQNTQD EDTSSNHVPT  300
LHLGQRKETE FAKQLQTFQP GHHEKSEYAE PSLLLPDLEM NPSVPFKTIT DPTGPAFYPS  360
LVPVPLTLWP PSVSHVEEAA RTHEILKPTP LNGKGVVKAD DVVGMSKLSI DEASSGSMEP  420
TALSLELIGS TDTRQSAFHV SPPMNRPELS KRNSSPIHAV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.251940.0aerial organ| meristem| pollen
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G400489
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G400489_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9652590.0EU965259.1 Zea mays clone 284869 myb-related transcription activator mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001149973.10.0myb-related transcription activator
TrEMBLB4FMD20.0B4FMD2_MAIZE; MYB-RELATED transcription factor
STRINGGRMZM2G400489_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.16e-71MYB_related family protein