PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GRMZM2G400489_P01 | ||||||||
Common Name | LOC100283600, ZEAMMB73_789233 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 533aa MW: 57786.5 Da PI: 9.8977 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 40.3 | 7.1e-13 | 204 | 248 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ ++ + ++lG+g+W+ I+r + Rt+ q+ s+ qky GRMZM2G400489_P01 204 PWTEEEHRMFLMGLQKLGKGDWRGISRNFVVSRTPTQVASHAQKY 248 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.757 | 197 | 253 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.07E-16 | 199 | 253 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.4E-18 | 200 | 252 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 5.5E-11 | 201 | 251 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.3E-12 | 201 | 247 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.9E-10 | 204 | 248 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.78E-9 | 204 | 249 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 533 aa Download sequence Send to blast |
MEMASLIAGR VVALHRSLPP PVEGTVADII VISSRPVLLN TPKYHLLGKR SEESEIQSTR 60 RRIWNAPARR TYEAHASAHV PEPSPRAGAP PERMTRRCSH CSNNGHNSRT CPVRSAGGGS 120 GGGGVRLFGV RLTTAPAPAV MKKSASMSCI VSSLGGGFGG SSPPVEGVGA GRGGEDSGTG 180 YVSDDPAHAS CSTNGRAERK KGTPWTEEEH RMFLMGLQKL GKGDWRGISR NFVVSRTPTQ 240 VASHAQKYFV RQTNSSRRKR RSSLFDMVPE MPMDESPAAV EQFTLQNTQD EDTSSNHVPT 300 LHLGQRKETE FAKQLQTFQP GHHEKSEYAE PSLLLPDLEM NPSVPFKTIT DPTGPAFYPS 360 LVPVPLTLWP PSVSHVEEAA RTHEILKPTP LNGKGVVKAD DVVGMSKLSI DEASSGSMEP 420 TALSLELIGS TDTRQSAFHR GFLSTFKDQG MMVQRQKSGW TSNKIRRVAV VNLVISSRYS 480 INCKMQGDQV RCVVPVPTIS EEEAGAGIAN AKQNMTASRS RFGLICNLRI FST |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Zm.25194 | 0.0 | aerial organ| meristem| pollen |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
Expression Atlas | GRMZM2G400489 |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GRMZM2G400489_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU965259 | 0.0 | EU965259.1 Zea mays clone 284869 myb-related transcription activator mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001149973.1 | 0.0 | myb-related transcription activator | ||||
TrEMBL | B4FMD2 | 0.0 | B4FMD2_MAIZE; MYB-RELATED transcription factor | ||||
STRING | GRMZM2G400489_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1939 | 37 | 91 | Representative plant | OGRP394 | 16 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G47390.1 | 2e-69 | MYB_related family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | GRMZM2G400489_P01 |