PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G396451_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GATA
Protein Properties Length: 1213aa    MW: 133824 Da    PI: 9.6927
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G396451_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA31.13.3e-10542566125
               GATA   1 CsnCgttkTplWRrgpdgnktLCna 25 
                        C +Cg+  Tp+WR+gp g+ tLCna
  GRMZM2G396451_P01 542 CLQCGAAVTPQWRSGPMGQGTLCNA 566
                        89**********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF001201.8E-20115228IPR008146Glutamine synthetase, catalytic domain
SuperFamilySSF559314.02E-18116226No hitNo description
Gene3DG3DSA:3.30.590.105.2E-21116228IPR014746Glutamine synthetase/guanido kinase, catalytic domain
SuperFamilySSF561121.49E-12265385IPR011009Protein kinase-like domain
Gene3DG3DSA:1.10.510.102.7E-10267331No hitNo description
PfamPF077141.5E-9269331IPR001245Serine-threonine/tyrosine-protein kinase catalytic domain
PROSITE profilePS501149.288536578IPR000679Zinc finger, GATA-type
SMARTSM004012.1E-7536593IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.23E-7537580No hitNo description
Gene3DG3DSA:3.30.50.104.6E-8540579IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.65E-8542597No hitNo description
PfamPF003201.0E-7542566IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.40.30.103.0E-12637706IPR012336Thioredoxin-like fold
PfamPF139059.1E-12640706IPR012336Thioredoxin-like fold
PROSITE profilePS513529.107759905IPR013766Thioredoxin domain
Gene3DG3DSA:3.40.30.101.4E-31772885IPR012336Thioredoxin-like fold
SuperFamilySSF528331.5E-17772880IPR012336Thioredoxin-like fold
PfamPF139052.9E-22784877IPR012336Thioredoxin-like fold
Gene3DG3DSA:3.30.230.103.6E-4710501200IPR014721Ribosomal protein S5 domain 2-type fold, subgroup
SuperFamilySSF542111.06E-2910511203IPR020568Ribosomal protein S5 domain 2-type fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006468Biological Processprotein phosphorylation
GO:0019287Biological Processisopentenyl diphosphate biosynthetic process, mevalonate pathway
GO:0045454Biological Processcell redox homeostasis
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0004163Molecular Functiondiphosphomevalonate decarboxylase activity
GO:0004356Molecular Functionglutamate-ammonia ligase activity
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 1213 aa     Download sequence    Send to blast
MGVDAAASAR LLPAMGVTWR FGPQAIHEGL HVPLLQMRFT NSKLLIVNLS QQRAMAIGGL  60
LGGPGRCTVV SMDEIKRTVP CWSVSSPFVN IGIYRSSPKQ LRSDSARYLE WSLSMLGKEN  120
REAPLRIACP PGVPLDLVSN FEIKSFDGCA NPHLGLAAVV AAGIDGLRRH LKLPEPIESN  180
SSDHSSKLKR LPQNLQESVE SLSVDKVLHE LIGDKLVTTA IAIRKQGIKY SNFSDLCQKQ  240
EAVKEVLGSL AKFACVLFPN IPEAYLDRWC DVYSFGVILW ELATLRMPWS GMNPMQVVGA  300
VGFQDRRLDI PKEVDPLVAR IIFECWQNDQ QRTGIYLVHL KAGARASTTH RAPAPAPARN  360
VFLPAIPPPP TPSLPFPASR PRRPSLQSRP RQRRVPAAHL SHLFLSLALL TRRRSVGCRL  420
SCLLARPLFM VMVDEGGKGE AQPPGLDPRT RRSAATRATD DMDGGGRGEE WEGAPPATCS  480
RSRRRRCPCP SSSPAWTPPS GARGATISAT VAIRRAGPAA PAPGPHTPTP AEERSAKRVR  540
MCLQCGAAVT PQWRSGPMGQ GTLCNAYRVR LKVAGVLRDQ GRLLPEYRPL ASPTFEPSEH  600
ANKHSQVMQL HRQRKSQGQH HPLPAEHPRA MDVLQFPQRW QAYTALRSAG KSVEIIFVSL  660
DRDEASFRDH FQGMSWLAVP FDAAGLLRQK LCARFAIERI PALIPLSASA TPSSGLGCGE  720
DAVRLVGEYG VDAYPFSAQR RRELESMDDA RRGGGRLQEL LGCEERDYVI SADDIKIPIA  780
DLAGKTVGLY FGAHWCPPCH VFTKQLKEVY NELKILRPVS FEVIFVSIDR SKGEFQASMS  840
SMPWLAIPYS DAVRKKLTRI FVVKGIPGLL ILGLDGKALK TDVHRPELLP TYEGSRCNKI  900
KGIKAPRITP KNVIRFSSYT DTFYFITPEA WYWSEYLYLK KESLTVVISD VKCDDLKEEG  960
KVQQTKRGNS IHDHSSSHSI RSFSALTESG PGLTSVHPSS RTRPPPFYAL LPRSDGPFAG  1020
DEHTPQQELS GVEQREARDP MAAAEGQWVL MATGRTPTNI AVIKYWGKRD EALILPINDS  1080
ISVTLDPDHL SATTTVAVSP SFPSDRMWLN GKEISLLGGR FQSCLREIRK RARDFEDKEK  1140
GVKIKKEDWD KLHVHIASYN NFPTAAGLAS SAAGLACFVF TLGKLMNVKE DYGELSSIAR  1200
DLGVHAAVYM VVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6n10_A4e-68104412005161Diphosphomevalonate decarboxylase MVD1, peroxisomal
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.143760.0cell culture| ear| embryo| endosperm| meristem| ovary| pericarp| pollen| root| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G396451
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G396451_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9603980.0EU960398.1 Zea mays clone 224503 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1R3MKB90.0A0A1R3MKB9_MAIZE; Diphosphomevalonate decarboxylase MVD2
STRINGGRMZM2G396451_P020.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.13e-21GATA transcription factor 9