PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G395842_P01 | ||||||||
Common Name | gpm902, ZEAMMB73_730346 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | C3H | ||||||||
Protein Properties | Length: 369aa MW: 41765.3 Da PI: 7.8724 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19 | 2.4e-06 | 4 | 27 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k +lC+ff+ G C G+ C F+H+ GRMZM2G395842_P01 4 KKVLCKFFMH-GACLKGEYCEFSHD 27 789***8888.*************5 PP | |||||||
2 | zf-CCCH | 28.4 | 2.8e-09 | 35 | 55 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C f+++ G C+yG+rC++ H+ GRMZM2G395842_P01 35 VCTFYQK-GACSYGSRCRYDHV 55 5******.*************7 PP | |||||||
3 | zf-CCCH | 19.3 | 2e-06 | 152 | 173 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C+ fa+ G C+yG+ C+ +Hg GRMZM2G395842_P01 152 PICS-FAAAGNCPYGEGCPQMHG 173 6788.*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF15663 | 9.7E-8 | 1 | 60 | No hit | No description |
SMART | SM00356 | 1.1E-5 | 2 | 28 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.192 | 2 | 29 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.66E-7 | 3 | 27 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.4E-4 | 4 | 30 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.277 | 30 | 57 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.4E-4 | 32 | 56 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.58E-5 | 32 | 54 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.3E-4 | 35 | 54 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.286 | 148 | 175 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.31 | 149 | 174 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF57850 | 4.29E-13 | 208 | 281 | No hit | No description |
Gene3D | G3DSA:3.30.40.10 | 4.1E-10 | 211 | 276 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
CDD | cd00162 | 7.23E-4 | 216 | 276 | No hit | No description |
PROSITE profile | PS50089 | 12.312 | 217 | 275 | IPR001841 | Zinc finger, RING-type |
Pfam | PF00097 | 3.0E-7 | 217 | 274 | IPR018957 | Zinc finger, C3HC4 RING-type |
SMART | SM00184 | 3.0E-7 | 217 | 274 | IPR001841 | Zinc finger, RING-type |
PROSITE pattern | PS00518 | 0 | 241 | 250 | IPR017907 | Zinc finger, RING-type, conserved site |
SMART | SM00356 | 0.019 | 304 | 332 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.526 | 304 | 333 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0006310 | anatomy | tassel floret | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006341 | anatomy | primary shoot system | ||||
PO:0006354 | anatomy | ear floret | ||||
PO:0006505 | anatomy | central spike of ear inflorescence | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0009066 | anatomy | anther | ||||
PO:0009074 | anatomy | style | ||||
PO:0009084 | anatomy | pericarp | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020104 | anatomy | leaf sheath | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0020148 | anatomy | shoot apical meristem | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0025287 | anatomy | seedling coleoptile | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0001094 | developmental stage | plant embryo coleoptilar stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage | ||||
PO:0007015 | developmental stage | radicle emergence stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007022 | developmental stage | seed imbibition stage | ||||
PO:0007026 | developmental stage | FL.00 first flower(s) open stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007045 | developmental stage | coleoptile emergence stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007094 | developmental stage | LP.01 one leaf visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007104 | developmental stage | LP.15 fifteen leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007112 | developmental stage | 1 main shoot growth stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage | ||||
PO:0021004 | developmental stage | inflorescence initiation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 369 aa Download sequence Send to blast |
MSTKKVLCKF FMHGACLKGE YCEFSHDWSD QANNVCTFYQ KGACSYGSRC RYDHVKVSRN 60 PTVPPPRPTS STSRRASTSL QLSSYNHPPH MVHQTDSSNQ RHQISVDVLA HSASKPAWRN 120 DFQHDIVSDD GIDWSSNQNL INQTSLKPVD LPICSFAAAG NCPYGEGCPQ MHGDLCATCG 180 KLCLHPYRPD EREEHIKLCE KNHKRLVALK RSQEIECSVC LDRVLSKPTA AERKFGLLSE 240 CDHPFCIECI RNWRSNSPAS GMDVNSALRA CPICRKLSYY VIPSVLWYFS KEEKEEITES 300 YKSKLKSIDC KYFDFGTGSC PFGTSCFYKH AYRDGRLEEV ILRHLDADDG STVIAKSIRL 360 SDFLGRMDL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.27257 | 0.0 | aerial organ| endosperm| meristem| ovary| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G395842 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in dry seeds. Increased expression throughout imbibition and germination and when radicle and shoots are emerging. Up-regulated during cell differentiation. {ECO:0000269|PubMed:17870591}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in primary roots and leaves. Detected in vascular bundle tissues. {ECO:0000269|PubMed:17870591}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | E3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G395842_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT065629 | 0.0 | BT065629.1 Zea mays full-length cDNA clone ZM_BFb0371O01 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001169041.1 | 0.0 | uncharacterized protein LOC100382879 | ||||
Refseq | XP_008658836.1 | 0.0 | uncharacterized protein LOC100382879 isoform X1 | ||||
Swissprot | Q5ZA07 | 0.0 | C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin | ||||
TrEMBL | A0A3L6DEX4 | 0.0 | A0A3L6DEX4_MAIZE; E3 ubiquitin-protein ligase makorin | ||||
TrEMBL | C0PBG0 | 0.0 | C0PBG0_MAIZE; Uncharacterized protein | ||||
TrEMBL | K0DG29 | 0.0 | K0DG29_MAIZE; C3H5 C3H type transcription factor (Fragment) | ||||
STRING | GRMZM2G395842_P02 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5326 | 33 | 56 | Representative plant | OGRP4067 | 15 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08505.2 | 1e-149 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G395842_P01 |
Entrez Gene | 100382879 |
Publications ? help Back to Top | |||
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