PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GRMZM2G386163_P02

Common Name

Zm.63792

Organism

Zea mays

Taxonomic ID

4577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea

Family

NAC

Protein Properties

Length: 757aa MW: 85353.3 Da PI: 6.0231

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GRMZM2G386163_P02	genome	MaizeSequence	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	177.6	3.3e-55	22	152	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtdeel+++yL++k+++ ++++ ++i+evd++k+ePwdLp+k+k +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke+ GRMZM2G386163_P02 22 LPPGFRFHPTDEELITYYLRQKIADASFTA-RAIAEVDLNKCEPWDLPEKAKLGEKEWYFFSLRDRKYPTGVRTNRATNAGYWKTTGKDKEI 112 79***********************999.89***********99999************************************* PP NAM 93 lsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ + elvg+kktLvfykgrap+gekt+Wvmheyrl GRMZM2G386163_P02 113 FTGqlpaTPELVGMKKTLVFYKGRAPRGEKTNWVMHEYRL 152 9766666667**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.8E-64	19	175	IPR003441	NAC domain
PROSITE profile	PS51005	61.241	22	175	IPR003441	NAC domain
Pfam	PF02365	9.2E-29	23	152	IPR003441	NAC domain
Pfam	PF13963	3.0E-6	366	392	IPR029480	Transposase-associated domain
Pfam	PF13952	2.7E-17	624	691	IPR025312	Domain of unknown function DUF4216

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 757 aa Download sequence Send to blast
MEASVGAAGG GGGKSKKEEE SLPPGFRFHP TDEELITYYL RQKIADASFT ARAIAEVDLN 60 KCEPWDLPEK AKLGEKEWYF FSLRDRKYPT GVRTNRATNA GYWKTTGKDK EIFTGQLPAT 120 PELVGMKKTL VFYKGRAPRG EKTNWVMHEY RLHHSSRSVP KSNKDEWVVC RVFAKSTGAK 180 KYPSNNAHSR LHHHPYALDM VPPLLQHDPF ARHHNYPYMT SADLAELARF ARGTPGLHPH 240 IQPAPHPGTS ASAYMNPAAA GAPPSFALSG GLSLNLGASP AMPPSLPPTA FHATMSMAMS 300 GQTAAPSCAG TGNNHRHQVV AGEHQQQQMA AAGLGGCVIV PGADGGFVAD AAAGGRYQSL 360 DVEQLVERRT MSIHICKNGY MPGYEVWVHH GEDPPPRIVS EVQSHEEEDY DRMEEMLDDV 420 RHEFLTVDSE NPGQPTEFED PATHEEHNVN AHTLRYHVDE PPISDIEIFQ WRGKTVGPST 480 TYYFTNDEWK TALLYMYNNM EEMSQFLLEF DSQNCIYGCE RDQIRREGKD GGLNFLCWFR 540 DYVDKNDNIH PDLRQLSLGA VTGRRYGRYD VNGFRFRSTR FEDDHPLSAT TNSGVVTRAV 600 DDEGKVTNYY GVINDIIEYK FFGDKQLKVV FFDCDWFSPN TTRENQYGMV EVKHNDRLKG 660 HDTIILAHQC EQVYYMTYPS KKNGLVDWRV VYKVNPRERL YAPGDAGYVE SQIEQEVGAA 720 EIFQDEELTS TFNVQTEMLE ESLLGDQNDV EVPPKRK

Sequence ? help Back to Top

Protein Sequence Length: 757 aa Download sequence Send to blast

MEASVGAAGG GGGKSKKEEE SLPPGFRFHP TDEELITYYL RQKIADASFT ARAIAEVDLN  60
KCEPWDLPEK AKLGEKEWYF FSLRDRKYPT GVRTNRATNA GYWKTTGKDK EIFTGQLPAT  120
PELVGMKKTL VFYKGRAPRG EKTNWVMHEY RLHHSSRSVP KSNKDEWVVC RVFAKSTGAK  180
KYPSNNAHSR LHHHPYALDM VPPLLQHDPF ARHHNYPYMT SADLAELARF ARGTPGLHPH  240
IQPAPHPGTS ASAYMNPAAA GAPPSFALSG GLSLNLGASP AMPPSLPPTA FHATMSMAMS  300
GQTAAPSCAG TGNNHRHQVV AGEHQQQQMA AAGLGGCVIV PGADGGFVAD AAAGGRYQSL  360
DVEQLVERRT MSIHICKNGY MPGYEVWVHH GEDPPPRIVS EVQSHEEEDY DRMEEMLDDV  420
RHEFLTVDSE NPGQPTEFED PATHEEHNVN AHTLRYHVDE PPISDIEIFQ WRGKTVGPST  480
TYYFTNDEWK TALLYMYNNM EEMSQFLLEF DSQNCIYGCE RDQIRREGKD GGLNFLCWFR  540
DYVDKNDNIH PDLRQLSLGA VTGRRYGRYD VNGFRFRSTR FEDDHPLSAT TNSGVVTRAV  600
DDEGKVTNYY GVINDIIEYK FFGDKQLKVV FFDCDWFSPN TTRENQYGMV EVKHNDRLKG  660
HDTIILAHQC EQVYYMTYPS KKNGLVDWRV VYKVNPRERL YAPGDAGYVE SQIEQEVGAA  720
EIFQDEELTS TFNVQTEMLE ESLLGDQNDV EVPPKRK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-55	21	181	16	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-55	21	181	16	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-55	21	181	16	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-55	21	181	16	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-55	21	181	19	174	NAC domain-containing protein 19
3swm_B	1e-55	21	181	19	174	NAC domain-containing protein 19
3swm_C	1e-55	21	181	19	174	NAC domain-containing protein 19
3swm_D	1e-55	21	181	19	174	NAC domain-containing protein 19
3swp_A	1e-55	21	181	19	174	NAC domain-containing protein 19
3swp_B	1e-55	21	181	19	174	NAC domain-containing protein 19
3swp_C	1e-55	21	181	19	174	NAC domain-containing protein 19
3swp_D	1e-55	21	181	19	174	NAC domain-containing protein 19
4dul_A	1e-55	21	181	16	171	NAC domain-containing protein 19
4dul_B	1e-55	21	181	16	171	NAC domain-containing protein 19
Search in ModeBase

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	GRMZM2G386163

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GRMZM2G386163_P02

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC206691	0.0	AC206691.5 Zea mays BAC clone CH201-149B20 from chromosome 10, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
STRING	GRMZM2G386163_P01	0.0	(Zea mays)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24430.2	5e-84	NAC domain containing protein 38

Link Out ? help Back to Top
Phytozome	GRMZM2G386163_P02