PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G380897_P01 | ||||||||
Common Name | ZEAMMB73_499635 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bZIP | ||||||||
Protein Properties | Length: 232aa MW: 26450.2 Da PI: 7.6474 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 20.2 | 1.3e-06 | 137 | 158 | 13 | 34 |
HHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 13 NReAArrsRqRKkaeieeLeek 34 NReAAr+s +RKka+i++Le GRMZM2G380897_P01 137 NREAARKSLLRKKAYIQQLESC 158 *******************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF12678 | 3.2E-10 | 59 | 93 | IPR024766 | Zinc finger, RING-H2-type |
SuperFamily | SSF57850 | 5.65E-12 | 61 | 103 | No hit | No description |
CDD | cd00162 | 3.59E-4 | 61 | 93 | No hit | No description |
Gene3D | G3DSA:3.30.40.10 | 2.0E-11 | 61 | 97 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
Gene3D | G3DSA:1.20.5.170 | 4.4E-5 | 137 | 177 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MDDDGGAFPS TSASAASRSL RRWFPFDPSP LPLVGPLLLV VVQELQRDTD SPTSKARIKY 60 DEENLRSITK CEHHFHLCCI LEWMERKDTC PVCDQNMATK FHTKSWQHTR FKGLFSIAYC 120 SYIFTVIHIS HGAAAYNREA ARKSLLRKKA YIQQLESCRL KLSQMEQDMQ RACSQARFLL 180 LLFLCLLNCN RTPEGKDECG RATVEECVSI AGDDRFLDHI HWEGAGSKDQ SA |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.118564 | 4e-54 | meristem| ovary| root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G380897 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G380897_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT064886 | 9e-52 | BT064886.1 Zea mays full-length cDNA clone ZM_BFb0326H15 mRNA, complete cds. | |||
GenBank | BT087397 | 9e-52 | BT087397.1 Zea mays full-length cDNA clone ZM_BFb0061G14 mRNA, complete cds. | |||
GenBank | EU958260 | 9e-52 | EU958260.1 Zea mays clone 1681933 RHB1A mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | GRMZM2G380897_P01 | 1e-175 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06839.3 | 3e-14 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G380897_P01 |