PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G380377_P01 | ||||||||
Common Name | DBP4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | ERF | ||||||||
Protein Properties | Length: 232aa MW: 24432.7 Da PI: 4.4344 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.8 | 2.7e-18 | 57 | 108 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ grWv+e+r+p +k+ r++lg+f t+e Aa+a++ a+++l+g GRMZM2G380377_P01 57 PVYRGVRRRGPAGRWVCEVREP---NKKSRIWLGTFATPEAAARAHDVAALALRG 108 68****************9998...347*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 7.8E-14 | 57 | 108 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.9E-25 | 58 | 122 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.1E-30 | 58 | 118 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.14E-20 | 58 | 118 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.168 | 58 | 116 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-5 | 59 | 70 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-5 | 82 | 98 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MEYAAVGYGY GYGYDERQEP AESADGGGGG DDEYATVLSA PPKRPAGRTK FRETRHPVYR 60 GVRRRGPAGR WVCEVREPNK KSRIWLGTFA TPEAAARAHD VAALALRGRA ACLNFADSAR 120 LLQVDPATLA TPDDIRRAAI QLADAASQQD ETAAVAADVV APSQADDVAA AAAAAAAMYG 180 GGMEFDHSYC YDDGMVSGSS DCWQSGAGAG GWHSIVDGDD DDGASDMTLW SY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-13 | 56 | 115 | 12 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.9463 | 0.0 | meristem| ovary |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G380377 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G380377_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ805752 | 0.0 | FJ805752.1 Zea mays DRE-binding protein 4 (DBP4) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001170481.1 | 1e-166 | uncharacterized protein LOC100384479 | ||||
Swissprot | A2Y8S6 | 4e-62 | DRE1C_ORYSI; Dehydration-responsive element-binding protein 1C | ||||
Swissprot | Q9LWV3 | 4e-62 | DRE1C_ORYSJ; Dehydration-responsive element-binding protein 1C | ||||
TrEMBL | A0A3L6E7Z0 | 1e-164 | A0A3L6E7Z0_MAIZE; Dehydration-responsive element-binding protein 1C | ||||
TrEMBL | C3UZ69 | 1e-164 | C3UZ69_MAIZE; DRE-binding protein 4 | ||||
STRING | GRMZM2G380377_P01 | 1e-165 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP196 | 36 | 261 | Representative plant | OGRP12742 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25480.1 | 3e-32 | dehydration response element B1A |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G380377_P01 |
Entrez Gene | 100384479 |
Publications ? help Back to Top | |||
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