PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G379005_P05
Common NameLOC100280196, ZEAMMB73_322379
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GATA
Protein Properties Length: 311aa    MW: 32659.4 Da    PI: 6.9302
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G379005_P05genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.63.5e-18228261134
               GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                        C++C+  kTp+WR gp g+ktLCnaCG++y++ +
  GRMZM2G379005_P05 228 CTHCQIEKTPQWRAGPLGPKTLCNACGVRYKSGR 261
                        *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577167.13E-15220284No hitNo description
SMARTSM004013.5E-16222272IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.055222258IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.0E-14226259IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.79E-14227284No hitNo description
PfamPF003207.8E-16228261IPR000679Zinc finger, GATA-type
PROSITE patternPS003440228253IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MADTQCDDID MDMDMAQLEW LSGLFDDASI PHEPAFPGAA PIIKSSALAA GALLPPDKME  60
DALLFRSSSP ISVLEHGSFN NANGGGGGCS ASSESSSASS SSESFSGSGS GSGEGHAWSA  120
PVSPPPVLVI PARARSKRSR PSAFTRAGAE APTILVPTPM YSSGPSHSDP ESIAESSPHP  180
APPMKKKKKA KKPPAPPAPA SSDDNDGDAD YEEGGERAEP QGGAVRRCTH CQIEKTPQWR  240
AGPLGPKTLC NACGVRYKSG RLFPEYRPAA SPTFVPSIHS NSHKKVVEMR QKAVRSGDPS  300
CDLLQFIRRR D
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.679730.0endosperm| glume| meristem| ovary| pericarp| root
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G379005
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G379005_P05
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0557550.0BT055755.1 Zea mays full-length cDNA clone ZM_BFb0170C21 mRNA, complete cds.
GenBankBT0670670.0BT067067.1 Zea mays full-length cDNA clone ZM_BFb0175B18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001146600.10.0uncharacterized protein LOC100280196
RefseqXP_008677139.10.0putative GATA transcription factor family protein isoform X1
RefseqXP_008677140.10.0putative GATA transcription factor family protein isoform X1
RefseqXP_020407097.10.0putative GATA transcription factor family protein isoform X1
TrEMBLB8A2G30.0B8A2G3_MAIZE; C2C2-GATA transcription factor
STRINGGRMZM2G379005_P020.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.25e-38GATA family protein