PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G353734_P01
Common NameZEAMMB73_977464
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ZF-HD
Protein Properties Length: 526aa    MW: 55497.2 Da    PI: 8.9135
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G353734_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer105.43.5e-33195250357
        ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrev 57 
                        +++Y+eClkNhAaslGgha+DGCgEfmps++++ +++++l+CaACgCHRnFHRr v
  GRMZM2G353734_P01 195 TWVYRECLKNHAASLGGHALDGCGEFMPSPEADrADPSSLRCAACGCHRNFHRRLV 250
                        689***************************9999*******************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.5E-27196249IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015666.6E-30198248IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-21198248IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.893198249IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.603.4E-27374440IPR009057Homeodomain-like
SuperFamilySSF466893.08E-15376439IPR009057Homeodomain-like
TIGRFAMsTIGR015651.4E-20381437IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006340anatomyadult vascular leaf
PO:0006354anatomyear floret
PO:0009001anatomyfruit
PO:0009025anatomyvascular leaf
PO:0009074anatomystyle
PO:0009089anatomyendosperm
PO:0020142anatomystem internode
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001052developmental stagevascular leaf expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MSPKFPPYLT SSLAEPRPDN TVHFREKTET NKRRQEGDQS GGAAGACCSD RMAGDQDASS  60
GDAVLSLQFR AAGGEPALRY KRQRVQAEDG RRGHSSGVCG GEDGIPGDGN DKGEEDGTGA  120
LAVAVTHHCR HRRQKIKGKK KLWMTVVTPS LSEKKGARER MEATVDLKYE PLFPNGGVSS  180
ATKKTRLRVA AGGETWVYRE CLKNHAASLG GHALDGCGEF MPSPEADRAD PSSLRCAACG  240
CHRNFHRRLV ELPLPPPLLA LPPPLAPAPA VASHVMRDSR RTMRGEEARL PAAFDDEAEE  300
SDASSDFYED RPLSPMPAQA AIVSPGYRQA TTHTLLALII GAPSPQTPAA APRPPPPTSV  360
GPMPAPATAP GAAAAAAAAA RKRSRTKFSP EQKQRMQALS SRLGWRLQKC DEAAVDQCCQ  420
EIGVSKGVFK VWMHNNKHNF VGGHSARRSA SASASAAAAN PAMQQRSDAA AVYPSSHGDG  480
APAAAVVAHP SAPPPVPVHS NFNIEGTAAD DFRVQPSTAS GGSPQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A4e-183814391775ZF-HD homeobox family protein
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G353734
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G353734_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9463760.0EU946376.1 Zea mays clone 306064 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008678609.10.0zinc-finger homeodomain protein 10
SwissprotQ6ER213e-62ZHD9_ORYSJ; Zinc-finger homeodomain protein 9
TrEMBLA0A1D6Q1P90.0A0A1D6Q1P9_MAIZE; Zinc-finger homeodomain protein 8
TrEMBLA0A3L6F8770.0A0A3L6F877_MAIZE; Zinc-finger homeodomain protein 10
STRINGGRMZM2G353734_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36463374
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.16e-27zinc finger homeodomain 1