PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G342217_P01
Common NameLOC103655152, ZEAMMB73_473687
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GRAS
Protein Properties Length: 771aa    MW: 82103.3 Da    PI: 6.6613
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G342217_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS425.15.9e-1304027701374
               GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetsekn...sseelaalklfsevs 88 
                        lv+lLl+cA++vs+gd+  a + L  l+  asp gd+mqR+a+yf+ ALaarl+++ ++ ++   +    ++++   s ++l++++++++++
  GRMZM2G342217_P01 402 LVHLLLACADFVSKGDQPSALRHLHLLRRVASPLGDSMQRVASYFADALAARLSSNNPSSSAGAgAGAGVAPYTfppSPDTLKVYQILYQAC 493
                        68*****************************************************7776665553555555566788*************** PP

               GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180
                        P++kf+h+taNqaI ea++ge+rvH++D+di qG QWpa+lqaLa+Rp+gpp+lR+Tgvg+     + +++etg+ La++A++l+vpfef++
  GRMZM2G342217_P01 494 PYIKFAHFTANQAIFEAFHGEDRVHVVDLDILQGYQWPAFLQALAARPGGPPTLRLTGVGH----PAAAVRETGRHLASLAASLRVPFEFHA 581
                        *************************************************************....88************************* PP

               GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272
                         va+rle l++ +L+ + gEalaVn v +lhr++   v+l      +L+++++  Pk++++veqea hn++ Fl rfleal+yysa+fdsl+
  GRMZM2G342217_P01 582 AVADRLERLRPAALHRRVGEALAVNAVNRLHRVP--AVHLGP----LLSMIRDQAPKIMTLVEQEAGHNGPYFLGRFLEALHYYSAIFDSLD 667
                        *********************************9..566666....********************************************** PP

               GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWk 363
                        a++p++s +r+kvE+ ll++ei+nvvacegaer++rhe+l +Wr+ +e  GF+pvpls  a++q + ll  ++ +dgyr+ e++g+l+lgW+
  GRMZM2G342217_P01 668 ATFPADSAQRMKVEQCLLAPEIRNVVACEGAERVARHERLDRWRRIMEGRGFEPVPLSPAAVAQSQVLLGLYGaGDGYRLTEDRGCLLLGWQ 759
                        ******************************************************************************************** PP

               GRAS 364 drpLvsvSaWr 374
                        dr+ +++SaWr
  GRMZM2G342217_P01 760 DRATIAASAWR 770
                        **********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098568.092376749IPR005202Transcription factor GRAS
PfamPF035142.0E-127402770IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 771 aa     Download sequence    Send to blast
MGMLNCVDTT SGAGAKLQHQ QQAPTSPTAS VSESNIVAPS VSADIDANDA LASLQALRFD  60
GDIDVEIQSP DIAMWESLFA EQMGAAGGDF LMLSPRRDFM AAGSPSRRDF MVSSPKRDYM  120
VSSSPKRDYM MSSPMRDLMA SSPKREYMVS SPRRDSSSSR RSPFSPNLFS TSGGGHQHGY  180
AAHGPTDGGV GGAGQPLYGG LANHHGKGKS QSPLHKGYIN NSGNKQSTGP SSLSCSSSYG  240
HADNDLPSMD TCFLDDYKDG GYIGYQQQMP GKQQAAPGIM VNNNGGCSTA VTTVGVAPSP  300
SSHQLPTLSE CLAMPEPAFV GGEEAAAGGL QMGVGLPSDL YYAGQFAGGG GGGLTTTSSS  360
LQHQMAKSDH QWAAAESSLH SMLGSVIQTE ADEQEQDSGL QLVHLLLACA DFVSKGDQPS  420
ALRHLHLLRR VASPLGDSMQ RVASYFADAL AARLSSNNPS SSAGAGAGAG VAPYTFPPSP  480
DTLKVYQILY QACPYIKFAH FTANQAIFEA FHGEDRVHVV DLDILQGYQW PAFLQALAAR  540
PGGPPTLRLT GVGHPAAAVR ETGRHLASLA ASLRVPFEFH AAVADRLERL RPAALHRRVG  600
EALAVNAVNR LHRVPAVHLG PLLSMIRDQA PKIMTLVEQE AGHNGPYFLG RFLEALHYYS  660
AIFDSLDATF PADSAQRMKV EQCLLAPEIR NVVACEGAER VARHERLDRW RRIMEGRGFE  720
PVPLSPAAVA QSQVLLGLYG AGDGYRLTED RGCLLLGWQD RATIAASAWR C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A8e-833887693377Protein SCARECROW
5b3h_D8e-833887693377Protein SCARECROW
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G342217
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G342217_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1363770.0AC136377.4 Oryza sativa Japonica Group chromosome 11 clone OSJNBa0028G07, complete sequence.
GenBankAC1377590.0AC137759.4 Oryza sativa Japonica Group chromosome 11 clone OSJNBb0008H02, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008680172.10.0DELLA protein GAI
TrEMBLA0A1D6PTF10.0A0A1D6PTF1_MAIZE; Protein SCARECROW
STRINGGRMZM2G342217_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92213141
Representative plantOGRP53661322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.15e-96RGA-like 1