PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G327059_P05
Common NameLOC100281788
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family TALE
Protein Properties Length: 620aa    MW: 66061.1 Da    PI: 6.653
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G327059_P05genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.26.7e-093764131954
                        HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                        Fe   ++yps  ++  LA+++gL+ +qV++WF N R +
  GRMZM2G327059_P05 376 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 413
                        664459******************************88 PP
2BELL87.31.7e-28239307472
               BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                        elq+ k kL  +leeVd+rY++y+eq++++++ Feavag  +a+ Yt+lA+++iSrhFr+L+d ++ q+
  GRMZM2G327059_P05 239 ELQRLKDKLYIMLEEVDRRYRRYCEQMRALAGGFEAVAGERAAAAYTALASRTISRHFRSLRDGVVAQL 307
                        89999*************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005749.3E-43158305IPR006563POX domain
PfamPF075261.7E-43164303IPR006563POX domain
PROSITE profilePS5007112.05354417IPR001356Homeobox domain
SMARTSM003896.6E-9357421IPR001356Homeobox domain
CDDcd000863.97E-12357418No hitNo description
SuperFamilySSF466892.31E-17358424IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.7E-28360423IPR009057Homeodomain-like
PfamPF059208.2E-18374413IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0008018anatomytransition vascular leaf
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0025142anatomyleaf tip
PO:0025541anatomybundle sheath cell
PO:0025589anatomyleaf lamina tip
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 620 aa     Download sequence    Send to blast
MAHDPSLGFA DYFSAAAAAG ATAMDDDVGA PELYGLHADD MEFLGMRGLA AMPPAAAHHQ  60
HHHHHGHSKA GALLDDDDAG VGPDVSGSAD DATMRFLSEQ QQQQHQAPLS LSLCRPDVAT  120
TLHEQQHLAG GGSSSRYHQE QQPAAWVQQQ HDYSPSPQQH AWHLRSSRFL VPAQQVLQEF  180
CSLPVDSSSA AASSKRAKAA NKPASQQQQQ QEDGGGAEGS SSSASWAPSP QIQAMDALEL  240
QRLKDKLYIM LEEVDRRYRR YCEQMRALAG GFEAVAGERA AAAYTALASR TISRHFRSLR  300
DGVVAQLQAA RRALGEKDVA VPGMTRGDTP RLRVLDQCIR QHKALTQAAG MMESHPWRPQ  360
RGLPERAVTI LRAWLFEHFL HPYPSDVDKH ILARQTGLSR SQVSNWFINA RVRLWKPMVE  420
EMYVEEMKAE GQDGGGQQQV GVAVANNPNP SSAGHASEAA EDDGRGDSGG GAVVDRKPTR  480
AQLLHDAGSL ASVVNIGGGS RAGFGIMDHL DFDAYGGHHA GAVSLTLGLQ QHDSHADGGA  540
GGVNIAFGAP PPAHHHGYLF APTAAAAGHQ MGGGVHPGLH HHVQFSGAGA GIDGEAAHGQ  600
EHYRGLQGGG GFHLLRDLAG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A7e-17363420158Homeobox protein Meis1
4xrs_B7e-17363420158Homeobox protein Meis1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.433670.0endosperm| ovary
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G327059
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G327059_P05
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9579800.0EU957980.1 Zea mays clone 1639087 BEL1-related homeotic protein 14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001355027.10.0uncharacterized protein LOC100281788
RefseqXP_008675423.10.0BEL1-related homeotic protein 14 isoform X1
RefseqXP_008675432.10.0BEL1-related homeotic protein 14 isoform X1
RefseqXP_008675437.10.0BEL1-related homeotic protein 14 isoform X1
RefseqXP_008675441.10.0BEL1-related homeotic protein 14 isoform X1
RefseqXP_008675447.10.0BEL1-related homeotic protein 14 isoform X1
RefseqXP_008675456.10.0BEL1-related homeotic protein 14 isoform X1
RefseqXP_008675463.10.0BEL1-related homeotic protein 14 isoform X1
TrEMBLB6SZ150.0B6SZ15_MAIZE; BEL1-related homeotic protein 14
STRINGGRMZM2G327059_P020.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.17e-82TALE family protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]