PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G320305_P01
Common NameZEAMMB73_503347
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 490aa    MW: 53469.6 Da    PI: 7.1351
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G320305_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.71.1e-073493751947
                        TTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding  19 lGggtWktIartmgkgRtlkqcksrwqky 47 
                        +G + Wk+I +++g ++t  q++s+ qky
  GRMZM2G320305_P01 349 FGCD-WKKIEEHVG-TKTTVQIRSHAQKY 375
                        6766.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF523432.36E-19112233No hitNo description
Gene3DG3DSA:3.40.50.802.7E-17156231No hitNo description
PfamPF001753.2E-12156226IPR001433Oxidoreductase FAD/NAD(P)-binding
SuperFamilySSF466891.6E-7347381IPR009057Homeodomain-like
PfamPF002495.5E-6348375IPR001005SANT/Myb domain
CDDcd001670.0051352376No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0003677Molecular FunctionDNA binding
GO:0016491Molecular Functionoxidoreductase activity
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MPRLSLTVTD DAAAMPFVLR LGGSPALRPG SQSPSWLRFG GRAGARKALF CSAEDARRCG  60
SDDDAEAEEC RRRGGSRVPS DRRIRGRNAA ATVGDLQSGD NVQITGPVGK EMLMPKDPNA  120
TIIMLATGTV QRSGLALPGC SNEQLVALQG GQYIDLYKEE FRKMKERASE NFRVDYAVSR  180
EQTNAAGERM YIQTRMAEYK EELWELLKKD NTYVYMCGLK GMENGIDDIM LDQESLKYNN  240
VNGRSSRWSG TDTVRSPSPS AQHLLVLLMA ENLSVQIQHW LQRQPYQEPN DADPEGMSSC  300
CEIDGGAETC VAYIAYLNVK NRLVRLQEAA EEGRSMECGG LLTAEFCRFG CDWKKIEEHV  360
GTKTTVQIRS HAQKYFLKVQ KLGLAVGLPL MYPRRHFAMQ QQQQSSVAGG SSATAMPLLH  420
GRQPTCAPVA MPGLAEPDTV AHHGSIGWSS PSVVVPAASG GGDKDARLGL GVGGSIDRSD  480
YKSGDQLVVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gaq_A1e-6195231138286FERREDOXIN-NADP+ REDUCTASE
1gaq_C1e-6195231138286FERREDOXIN-NADP+ REDUCTASE
1gaw_A1e-6195231138286FERREDOXIN-NADP+ REDUCTASE
1gaw_B1e-6195231138286FERREDOXIN-NADP+ REDUCTASE
3w5u_A1e-6195231138286Ferredoxin
3w5u_C1e-6195231138286Ferredoxin
3w5u_E1e-6195231138286Ferredoxin
3w5u_G1e-6195231138286Ferredoxin
3w5v_A1e-6195231138286Ferredoxin
3w5v_C1e-6195231138286Ferredoxin
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.264961e-105ear| meristem| shoot
Zm.945061e-105aerial organ| leaf| pericarp
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G320305
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G320305_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0356441e-103AB035644.1 Zea mays L-FNRI mRNA for ferredoxin, complete cds.
GenBankBT0550021e-103BT055002.1 Zea mays full-length cDNA clone ZM_BFc0191E01 mRNA, complete cds.
GenBankEU9594841e-103EU959484.1 Zea mays clone 218294 ferredoxin--NADP reductase, leaf isozyme mRNA, complete cds.
GenBankEU9730041e-103EU973004.1 Zea mays clone 391543 ATP binding protein mRNA, complete cds.
GenBankEU9731701e-103EU973170.1 Zea mays clone 394487 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGGRMZM2G320305_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09600.21e-13MYB_related family protein