PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GRMZM2G316840_P01 | ||||||||
Common Name | LOC100382216 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 211aa MW: 22834.1 Da PI: 4.748 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 106.3 | 3.7e-33 | 10 | 131 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGf+F P+deelvv++L++k++ +++ +++++v +++++Pw+L+ k+ + ++wyfFs+++ ++rat +gyW++ d++v GRMZM2G316840_P01 10 LPPGFHFFPSDEELVVHFLRRKASLLPCQP-DIVPTVCMNHHDPWELNGKALEAGSQWYFFSHAK--------QSRATPNGYWSSVCADETV 92 79*************************999.89**************966667789******974........5799*************** PP NAM 93 lsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128 ls + +vglkktLvf +g+ ++g +t+W+mhey+l GRMZM2G316840_P01 93 LSGgggCSVVVGLKKTLVFSTGEPSDGAETNWIMHEYHL 131 **86666667***************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.59E-42 | 7 | 171 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 39.51 | 10 | 173 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.8E-23 | 11 | 131 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 211 aa Download sequence Send to blast |
MGGASDSNLL PPGFHFFPSD EELVVHFLRR KASLLPCQPD IVPTVCMNHH DPWELNGKAL 60 EAGSQWYFFS HAKQSRATPN GYWSSVCADE TVLSGGGGCS VVVGLKKTLV FSTGEPSDGA 120 ETNWIMHEYH LLDGRTGGSS SSSSASSIHS SSKKSHHPNT EFSNWVICRV FDSTGGGSQA 180 NCHDDEGMEL SCLDELFLSL DDYDEVSLSS N |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 8e-30 | 10 | 173 | 20 | 168 | NAC domain-containing protein 19 |
3swm_B | 8e-30 | 10 | 173 | 20 | 168 | NAC domain-containing protein 19 |
3swm_C | 8e-30 | 10 | 173 | 20 | 168 | NAC domain-containing protein 19 |
3swm_D | 8e-30 | 10 | 173 | 20 | 168 | NAC domain-containing protein 19 |
3swp_A | 8e-30 | 10 | 173 | 20 | 168 | NAC domain-containing protein 19 |
3swp_B | 8e-30 | 10 | 173 | 20 | 168 | NAC domain-containing protein 19 |
3swp_C | 8e-30 | 10 | 173 | 20 | 168 | NAC domain-containing protein 19 |
3swp_D | 8e-30 | 10 | 173 | 20 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
Expression Atlas | GRMZM2G316840 |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in root xylem vessels (PubMed:15923329). Expressed in stems, vascular tissue of cauline leaves and tracheary elements of sepals (PubMed:18069942). {ECO:0000269|PubMed:15923329, ECO:0000269|PubMed:18069942}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GRMZM2G316840_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT063557 | 0.0 | BT063557.1 Zea mays full-length cDNA clone ZM_BFc0077D21 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008668325.1 | 1e-155 | putative NAC domain transcription factor superfamily protein isoform X1 | ||||
Swissprot | Q8GWK6 | 3e-60 | NC104_ARATH; NAC domain-containing protein 104 | ||||
TrEMBL | A0A1D6EA94 | 1e-154 | A0A1D6EA94_MAIZE; NAC domain-containing protein 104 | ||||
STRING | GRMZM2G316840_P01 | 1e-154 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3667 | 36 | 79 | Representative plant | OGRP4510 | 10 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G64530.1 | 2e-56 | xylem NAC domain 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | GRMZM2G316840_P01 |
Entrez Gene | 100382216 |
Publications ? help Back to Top | |||
---|---|---|---|
|