PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GRMZM2G315515_P01 | ||||||||
Common Name | C3H8, ZEAMMB73_337051 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 215aa MW: 23290.4 Da PI: 8.9359 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.5 | 4.8e-08 | 45 | 70 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC+ f + tC+y +C+FaHg+ GRMZM2G315515_P01 45 FKTKLCCKFWA-RTCPYVTNCNFAHGM 70 58888888888.8************95 PP | |||||||
2 | zf-CCCH | 19.1 | 2.3e-06 | 120 | 145 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C+ f+ C+yGd+C+F H+ GRMZM2G315515_P01 120 YKGRHCKKFYTEEGCPYGDTCTFLHD 145 78888********************7 PP | |||||||
3 | zf-CCCH | 44.4 | 2.8e-14 | 183 | 208 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg GRMZM2G315515_P01 183 WKTRICNKWEMTGYCPFGSKCHFAHG 208 8************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 3.6E-11 | 38 | 75 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.79E-6 | 42 | 74 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 10.652 | 44 | 71 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.6E-5 | 45 | 70 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.6 | 46 | 70 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-7 | 119 | 147 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.4E-9 | 119 | 147 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.573 | 119 | 147 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.35 | 119 | 146 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.6E-15 | 178 | 208 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.09E-9 | 180 | 209 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.629 | 182 | 210 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.5E-9 | 182 | 209 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.5E-11 | 183 | 208 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0006310 | anatomy | tassel floret | ||||
PO:0009066 | anatomy | anther | ||||
PO:0001007 | developmental stage | pollen development stage |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 215 aa Download sequence Send to blast |
MTGTPPRGRG ASSRCLVRRL TAGAAAAMVA AGAAQASQRH RKMFFKTKLC CKFWARTCPY 60 VTNCNFAHGM EELCKPPPNW QEIVATHEDA TTKQGEEHQI PIMTSRSVIA GDDGGGGRAY 120 KGRHCKKFYT EEGCPYGDTC TFLHDEQSKA RESVAISLLP TIGGGGYNAA SASGSMAQNS 180 SNWKTRICNK WEMTGYCPFG SKCHFAHGST VIPNL |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Zm.17566 | 3e-98 | ear| endosperm| leaf| meristem| shoot |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
Expression Atlas | GRMZM2G315515 |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GRMZM2G315515_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KJ728038 | 0.0 | KJ728038.1 Zea mays clone pUT6183 C3H transcription factor (C3H8) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001357899.1 | 1e-162 | zinc finger CCCH domain-containing protein 56-like | ||||
Swissprot | Q84UQ3 | 2e-81 | C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56 | ||||
TrEMBL | K7UB91 | 1e-161 | K7UB91_MAIZE; C3H transcription factor | ||||
STRING | GRMZM2G315515_P01 | 1e-161 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6615 | 38 | 53 | Representative plant | OGRP2045 | 17 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G32360.1 | 1e-62 | C3H family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | GRMZM2G315515_P01 |