PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G312201_P04
Common NameZm.10304
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 454aa    MW: 50289.7 Da    PI: 8.7213
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G312201_P04genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM167.83.6e-52191461128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lppGfrFhPtdeelvv+yL++kv+++++++  +i+evd+yk++PwdLp+k+  ++kewyfF++rd+ky++g+r+nr++ +gyWkatg dk++
  GRMZM2G312201_P04  19 LPPGFRFHPTDEELVVYYLCRKVARQQVPV-PIIAEVDLYKFDPWDLPEKALFGRKEWYFFTPRDRKYPNGSRPNRTAGKGYWKATGADKSI 109
                        79****************************.88***************8877899************************************* PP

                NAM  93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +   ++++ g+kk Lvfy+g+ap+g+ktdW+mheyr+
  GRMZM2G312201_P04 110 VPMgSTRAAGIKKALVFYSGKAPRGVKTDWIMHEYRV 146
                        99866778***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.66E-6215172IPR003441NAC domain
PROSITE profilePS5100560.34119172IPR003441NAC domain
PfamPF023651.0E-2620146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MVAAAEGSGR RDAEAELNLP PGFRFHPTDE ELVVYYLCRK VARQQVPVPI IAEVDLYKFD  60
PWDLPEKALF GRKEWYFFTP RDRKYPNGSR PNRTAGKGYW KATGADKSIV PMGSTRAAGI  120
KKALVFYSGK APRGVKTDWI MHEYRVAQAD HTLGKKGSQK LDEWVLCRLY NKRNNWDKVK  180
VEEQELEAAP RRQHHLQSAE DSMSNSFQTH DSDIDNVFEL QNCYGNNMVQ GQAMTPRNDI  240
GVVTVKEDND WFTDMNLDDL QASYNMAHTT NHSTVTFQSF FLKLHPFCPH RTTGDAHVRA  300
AGQCGPILHG LNLGSHEPSA PHSVTHQPPL RDEVSRVTQT AVLRLASGDL RPPSPAAVLC  360
HGPWTVVRQQ QGSSLCPTAC PPPASATSAS GLWAPVSRLC PRRSSSGLRH QALSYSSTAP  420
VPATARSSTP PSRTALKVCA PFSASPNSPC FTDF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-89111787174Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.103040.0cell culture| meristem| ovary
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G312201
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in stems, leaf blades and callus. Weakly expressed in developing flowers. {ECO:0000269|PubMed:10660065}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G312201_P04
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress (PubMed:18813954, PubMed:20632034). Induced by dehydration, cold stress and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2835370.0KP283537.1 Zea mays NAC protein (Zma29150) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001308570.10.0NAC protein isoform 1
SwissprotQ52QH41e-138NAC68_ORYSJ; NAC domain-containing protein 68
TrEMBLA0A1D6N8W30.0A0A1D6N8W3_MAIZE; Pentatricopeptide repeat-containing protein mitochondrial
STRINGGRMZM2G312201_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08790.13e-83NAC family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Taga Y, et al.
    Role of OsHSP90 and IREN, Ca2+ dependent nuclease, in plant hypersensitive cell death induced by transcription factor OsNAC4.
    Plant Signal Behav, 2009. 4(8): p. 740-2
    [PMID:19820348]
  3. Xia N, et al.
    Characterization of a novel wheat NAC transcription factor gene involved in defense response against stripe rust pathogen infection and abiotic stresses.
    Mol. Biol. Rep., 2010. 37(8): p. 3703-12
    [PMID:20213512]
  4. Takasaki H, et al.
    The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.
    Mol. Genet. Genomics, 2010. 284(3): p. 173-83
    [PMID:20632034]
  5. Nakayama A, et al.
    Genome-wide identification of WRKY45-regulated genes that mediate benzothiadiazole-induced defense responses in rice.
    BMC Plant Biol., 2013. 13: p. 150
    [PMID:24093634]
  6. Ootsubo Y,Hibino T,Wakazono T,Mukai Y,Che FS
    IREN, a novel EF-hand motif-containing nuclease, functions in the degradation of nuclear DNA during the hypersensitive response cell death in rice.
    Biosci. Biotechnol. Biochem., 2016. 80(4): p. 748-60
    [PMID:26766411]