PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G301089_P01
Common NameZm.11891
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 299aa    MW: 32369.2 Da    PI: 6.3205
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G301089_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.26.1e-08130174554
                        HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        h +rEr+RR+++ ++++ L  l+  +      + +K +i++ A  YI++L
  GRMZM2G301089_P01 130 HMMRERQRREKLSQSYADLHALVAAR-----SRGDKNSIVQAAAVYIHEL 174
                        889**********************7.....5888889*********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.93E-12125193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.693125174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-9129192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.70E-8129175No hitNo description
PfamPF000102.4E-5130174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-5131180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MQMDSYNYNY ASFFHDEAPS FYPHVAVPPS PELPIGLIAS PGEPEPPFAP PMPASFQDYT  60
GAVGVGVGVR APFGGASVHG QAIDALGGGD GQREQSMAMA EDGEEPAPRR RQPAGGPAAA  120
AVESSRGFRH MMRERQRREK LSQSYADLHA LVAARSRGDK NSIVQAAAVY IHELRGARDQ  180
LQRRNEELKA RILGHDAGQQ CVKVQFEVDE PASAIDSMIG ALRRLKGMDV RARGIRSSLS  240
GRRLWTEMNV ETTMAADEVE RGVEEALLQE VERKQQQQLG AGSAAPGFPG PSSHVQNVF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.118910.0ovary
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G301089
Functional Description ? help Back to Top
Source Description
UniProtMay act on an initial response of jasmonate-regulated gene expression toward drought tolerance as part of a BHLH148-TIFY11D/JAZ12-COI1A complex. {ECO:0000269|PubMed:21332845}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G301089_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), methyl jasmonate (MeJA), drought, cold, salt and wounding. {ECO:0000269|PubMed:21332845}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9556230.0EU955623.1 Zea mays clone 1539864 helix-loop-helix DNA-binding domain containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001147499.20.0uncharacterized protein LOC100281108
SwissprotQ75KV91e-100BH148_ORYSJ; Transcription factor BHLH148
TrEMBLA0A1D6L3M10.0A0A1D6L3M1_MAIZE; Helix-loop-helix DNA-binding domain containing protein
TrEMBLA0A317YC060.0A0A317YC06_MAIZE; Transcription factor BHLH148
STRINGGRMZM2G301089_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59403450
Representative plantOGRP97631112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43650.12e-20bHLH family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]