PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G180979_P01
Common NameLOC103643848, Zm.158821
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C3H
Protein Properties Length: 746aa    MW: 79771.8 Da    PI: 6.8541
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G180979_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.73.7e-07308328526
                        --SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                        +C++f++ G C++Gd C +aHg
  GRMZM2G180979_P01 308 PCPDFRK-GVCRRGDMCEYAHG 328
                        8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd002047.15E-1352168No hitNo description
PROSITE profilePS5029715.80490165IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.7E-1590169IPR020683Ankyrin repeat-containing domain
PfamPF127966.2E-1090159IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484037.17E-1490168IPR020683Ankyrin repeat-containing domain
SMARTSM002480.3790120IPR002110Ankyrin repeat
PROSITE profilePS5008812.689125160IPR002110Ankyrin repeat
SMARTSM002480.12125157IPR002110Ankyrin repeat
SMARTSM003561.1E-5303329IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-4307330IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.375308330IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-4308328IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-4336366IPR000571Zinc finger, CCCH-type
SMARTSM0035637338361IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 746 aa     Download sequence    Send to blast
MNGMPISASS AASVDSGAVA AGTPMKNATA ADALAEMARH LTVDTEDTFA GLLELAADDD  60
AEGLRLALER APPAAADEAG LWYGRRKVLE HRTPLMVAAT YGSLAALRLL VSISYVDVNR  120
RSGTDGTTAL HCAASGGSRT AVESVKLLLG AGADANTMDD AGRRPADVIS VPPKMFDAKF  180
ALQDLLGFPK SEHGMLRVVT RSTNSISSPV SSPTAEDARS PSASVMMMTK FADLPRVATS  240
EKKEYPVDPS LPDIKNSIYA SDEFRMYSFK IRPCSRAYSH DWTECPFVHP GENARRRDPR  300
KYHYSCVPCP DFRKGVCRRG DMCEYAHGVF ECWLHPAQYR TRLCKDGTSC NRRVCFFAHT  360
TDELRPLYVS TGSAVPSPRA SATAAMEMAA AMGLMPGSPS SVSAVMSPFT PPMSPSGNGM  420
PPSLGWQQPN VPTLHLPGSS LQSSRLRTSL SARDMPADDY SMMRDLDSQL MNDLCYSRLS  480
SSTGNHSART KSLNPSNLDD LFSAEMLSSP RYSNADQGAM FSPSHKAAIL NQFQQQQQAL  540
LSPINTGVYS PKGVDNQQLP SHSSLLQASL GMPSPGRMSP RCVESGSPMS SHLAAALVQR  600
EKQQQTMRSL SSRDLGPSAA RASALGSPLS SSWSKWGSPS GTPDWGINGE ELGKLRRSSS  660
FELRSGGDDP DLSWVHTLVK ESPPEKQVTT AESISSVGPS PLMPPGMNNG DGSGLSTQLD  720
GHDQAAVIGA LLEQMQLDQQ IGSLAT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.36010.0cell culture| meristem| ovary| pedicel| root| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G180979
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G180979_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0619330.0BT061933.1 Zea mays full-length cDNA clone ZM_BFb0199C03 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008665236.10.0zinc finger CCCH domain-containing protein 24
SwissprotQ10EL10.0C3H24_ORYSJ; Zinc finger CCCH domain-containing protein 24
TrEMBLA0A1D6L0C80.0A0A1D6L0C8_MAIZE; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A317YA520.0A0A317YA52_MAIZE; Zinc finger CCCH domain-containing protein 24
STRINGGRMZM2G180979_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82337126
Representative plantOGRP7091569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]