PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G179677_P05
Common NameLOC100856999
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 542aa    MW: 56828.4 Da    PI: 9.2839
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G179677_P05genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-056789123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       ++C+ C+k F r  nL+ H r H
  GRMZM2G179677_P05 67 FVCEVCNKGFQREQNLQLHRRGH 89
                       89*******************88 PP
2zf-C2H213.20.00027143165123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        +kC +C+k++  +s+ k H +t+
  GRMZM2G179677_P05 143 WKCDKCNKRYAVQSDWKAHSKTC 165
                        58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.4E-66689IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.96E-76689No hitNo description
PfamPF121713.5E-56789IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.00416789IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.0946789IPR007087Zinc finger, C2H2
PROSITE patternPS0002806989IPR007087Zinc finger, C2H2
SMARTSM00355300108138IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.0E-5131164IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.96E-7138163No hitNo description
SMARTSM00355110143163IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MAAASSAHLF GLGDGQMQMQ PQQQQAPPPP LVNNPAAPPP KKKRNQPDPD AEVIALSPKT  60
LMATNRFVCE VCNKGFQREQ NLQLHRRGHN LPWKLKQKNP KETRRRVYLC PEPTCVHHDP  120
SRALGDLTGI KKHYCRKHGE KKWKCDKCNK RYAVQSDWKA HSKTCGTREY RCDCGTLFSR  180
RDSFITHRAF CDALAQESAR VPPMGAGMYG TGGMALGLSG MATSQLQSFQ DQTHSSATTA  240
ISNNPTAQFE HLMQSSTGSP VFRGAQPTSS SSSPFYLGGA EDGHQSLSGH TSLLHGNKQA  300
YHGLMLLPEQ QHQAGSNGLL NLGFFSGGSS GQDARLVFPD QFNGAVGGNV RGDGSEHGNS  360
GANTESAAIF SGNLMGNHQM ASSAGFSSSL YNSSETAAPA QMSATALLQK AAQMGATTSS  420
GNVNSLLRGL GSSAGGTLNG RPAGAAAGFM AGESSSARST SQAENESQFR DLMNTLAASG  480
SGAAGTAFSG GFPGMDDSKL STRDFLGVGG SVVRSMGGAA GLPLRHGGAA GIGMGSLDTE  540
MK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-33139204368Zinc finger protein JACKDAW
5b3h_F1e-33139204368Zinc finger protein JACKDAW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.64220.0ear
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G179677
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in leaf tissues. {ECO:0000305|PubMed:22898356}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00256DAPTransfer from AT2G02080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G179677_P05
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0538220.0BT053822.1 Zea mays full-length cDNA clone ZM_BFb0209O02 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008649023.10.0uncharacterized protein LOC542697 isoform X7
SwissprotQ9ZUL31e-120IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBLB7ZWY00.0B7ZWY0_MAIZE; Uncharacterized protein
STRINGGRMZM2G179677_P020.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.11e-106indeterminate(ID)-domain 5
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]