PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G179021_P01 | ||||||||
Common Name | LOC103633089 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | SRS | ||||||||
Protein Properties | Length: 221aa MW: 23231.9 Da PI: 6.9201 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 96.7 | 4.5e-30 | 49 | 186 | 4 | 154 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssae 95 +++CqdCG +ak C CC rgf C h k +vpa++ ++rqq+laa + skr+++ + s +++t++ss + GRMZM2G179021_P01 49 ASIRCQDCGHRAKA----YYCAHCCSDRGFVCPGHAKTPYVPASQCSKRQQRLAAVDVEL-----MPISKRPHR--PALPSVAAHTTTSSVD 129 5789********95....56999*****************************99985544.....345555554..4667777788888888 PP DUF702 96 skkelet.sslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++ +++ +++ +evs +avfr+vr+++ e ++aY t+++i+Ghvf+G+Lyd G+++ GRMZM2G179021_P01 130 QPIVTPAlQRFAREVSLDAVFRRVRLGGP---EPDVAYYTTITIAGHVFRGVLYDVGPHS 186 8877765166****************985...5789*********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 7.7E-33 | 50 | 185 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01624 | 6.0E-13 | 140 | 184 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MHPFDAASFF STTPEGGSFD ARQQEEELAG AASSSPTPSR GTRAGVENAS IRCQDCGHRA 60 KAYYCAHCCS DRGFVCPGHA KTPYVPASQC SKRQQRLAAV DVELMPISKR PHRPALPSVA 120 AHTTTSSVDQ PIVTPALQRF AREVSLDAVF RRVRLGGPEP DVAYYTTITI AGHVFRGVLY 180 DVGPHSGSGS TAASDTDGSG EEVGSSLTTA GGSCLDLTLG M |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G179021 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G179021_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008652989.1 | 1e-161 | protein SHI RELATED SEQUENCE 1 | ||||
TrEMBL | A0A1D6I9Q9 | 1e-159 | A0A1D6I9Q9_MAIZE; Protein SHI RELATED SEQUENCE 1 | ||||
STRING | GRMZM2G179021_P01 | 1e-160 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP21053 | 7 | 7 | Representative plant | OGRP19597 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66350.1 | 2e-22 | Lateral root primordium (LRP) protein-related |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G179021_P01 |
Entrez Gene | 103633089 |