PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G175000_P02
Common NameLOC100216676
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 187aa    MW: 20925 Da    PI: 8.7188
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G175000_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.6e-056890323
                       ET..TTTEEESSHHHHHHHHHHT CS
            zf-C2H2  3 Cp..dCgksFsrksnLkrHirtH 23
                       C+  +Cgk+F + s L++H ++H
  GRMZM2G175000_P02 68 CSyeNCGKTFVDVSALRKHASVH 90
                       77779**************9998 PP
2zf-C2H221.75.3e-0795119123
                        EEET..TTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                        y C+  +Cgk F ++s LkrH  tH
  GRMZM2G175000_P02  95 YICNepNCGKKFVDSSKLKRHYLTH 119
                        899999****************999 PP
3zf-C2H221.37.2e-07125149123
                        EEET..TTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                        ++Cp   Cgk Fs   nL++H++tH
  GRMZM2G175000_P02 125 FVCPhpGCGKAFSLDFNLRSHLKTH 149
                        89**********************9 PP
4zf-C2H211.10.0012155179123
                        EEET..TTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                        + Cp   Cgk+F++   L  H ++H
  GRMZM2G175000_P02 155 HICPfpACGKRFTSDFKLGAHVKSH 179
                        6799999****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.7E-126190IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.7596695IPR007087Zinc finger, C2H2
SMARTSM003550.0116690IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806890IPR007087Zinc finger, C2H2
SuperFamilySSF576671.1E-969119No hitNo description
Gene3DG3DSA:3.30.160.602.8E-1491115IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015714.29595124IPR007087Zinc finger, C2H2
SMARTSM003550.001395119IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028097119IPR007087Zinc finger, C2H2
SuperFamilySSF576675.82E-13106158No hitNo description
Gene3DG3DSA:3.30.160.601.6E-19116150IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.926125154IPR007087Zinc finger, C2H2
SMARTSM003558.3E-4125149IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280127149IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.7E-8152179IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.432155179IPR007087Zinc finger, C2H2
SMARTSM003550.11155179IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280157179IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
ANPLRAVAIG FGCASFPRIP QDLASSGGKC SLFKWVREDG YRNSKDNPRV LDVEAPKPEP  60
TTEILFLCSY ENCGKTFVDV SALRKHASVH NEKQYICNEP NCGKKFVDSS KLKRHYLTHT  120
GQKDFVCPHP GCGKAFSLDF NLRSHLKTHA LENYHICPFP ACGKRFTSDF KLGAHVKSHE  180
KVCCYCA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C5e-33591822120PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.264440.0cell culture| ear| meristem| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G175000
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Rapidly induced following seed germination, especially in tender cotyledons. {ECO:0000269|PubMed:26961720}.
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers, to a lower extent in seedlings, stems and leaves, and, at low levels, in roots and senescent leaves. {ECO:0000269|PubMed:26961720}.
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G175000_P02
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0668850.0BT066885.2 Zea mays full-length cDNA clone ZM_BFb0091B06 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001136556.11e-118uncharacterized protein LOC100216676
SwissprotQ2V3L32e-66YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLA0A3L6EAM61e-117A0A3L6EAM6_MAIZE; Putative zinc finger protein
TrEMBLB4FJ721e-117B4FJ72_MAIZE; C2H2 transcription factor
STRINGGRMZM2G175000_P011e-118(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.18e-69C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  3. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]