PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G174610_P02 | ||||||||
Common Name | LOC100273110 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | B3 | ||||||||
Protein Properties | Length: 133aa MW: 15163 Da PI: 4.9207 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 55.4 | 1.1e-17 | 1 | 84 | 5 | 96 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 +++s+v++ +l lp +f++++ + +++ ++lede+g +++ + +++ + l++GW++F+ ++L+egD++vF+l ++++f ++ + GRMZM2G174610_P02 1 MVRSHVSSCFWLGLPISFCKNNL-P-SKEFRMVLEDEEGLEFDAVY--IGNRTG--LSGGWRGFAMHHNLEEGDSLVFELAEHDKF--KIYI 84 57899**************7764.4.46689***************..555444..***********************9987888..5555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 4.4E-15 | 1 | 88 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.21 | 1 | 88 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.1E-16 | 1 | 86 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.73E-19 | 1 | 86 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.4E-16 | 1 | 85 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 9.32E-22 | 1 | 86 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 133 aa Download sequence Send to blast |
MVRSHVSSCF WLGLPISFCK NNLPSKEFRM VLEDEEGLEF DAVYIGNRTG LSGGWRGFAM 60 HHNLEEGDSL VFELAEHDKF KIYIIKAIDD DVKEAEPDDK NDNGVTKEEP DQEESPVAEP 120 PKGAKRRKLR GRR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 120 | 126 | PKGAKRR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.26440 | 0.0 | ear| embryo| endosperm| meristem| ovary| shoot| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G174610 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G174610_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT040217 | 0.0 | BT040217.1 Zea mays full-length cDNA clone ZM_BFc0072G10 mRNA, complete cds. | |||
GenBank | BT068384 | 0.0 | BT068384.1 Zea mays full-length cDNA clone ZM_BFb0147P17 mRNA, complete cds. | |||
GenBank | EU945262 | 0.0 | EU945262.1 Zea mays clone 246231 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001141031.1 | 8e-96 | uncharacterized protein LOC100273110 | ||||
Swissprot | Q5KQI4 | 2e-67 | Y5814_ORYSJ; B3 domain-containing protein Os05g0481400 | ||||
TrEMBL | A0A3L6EG14 | 1e-93 | A0A3L6EG14_MAIZE; B3 domain-containing protein | ||||
TrEMBL | B4FSX9 | 2e-94 | B4FSX9_MAIZE; Putative B3 domain-containing protein | ||||
STRING | GRMZM2G174610_P01 | 3e-95 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 2e-31 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G174610_P02 |
Entrez Gene | 100273110 |
Publications ? help Back to Top | |||
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