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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
GRMZM2G172657_P01 |
| Common Name | GRAS19, LOC100383480 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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| Family |
GRAS |
| Protein Properties |
Length: 592aa MW: 63904.6 Da PI: 5.9479 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| GRMZM2G172657_P01 | genome | MaizeSequence | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 309.4 | 8.3e-95 | 187 | 591 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.fsevsPilk 92
+lLlecA+av+ +d +++q+l++ l+elasp+gd q+la+yf+++L arl+ s++++ ++l++ +++++ s +++ + l f+e+sP+
GRMZM2G172657_P01 187 SQLLLECARAVAGRDSQRVQQLMWMLNELASPYGDVEQKLASYFLQGLFARLTASGPRTLRTLAAASDRNT-SFDSTRRTALrFQELSPWSS 277
589************************************************************99888744.44444444446********* PP
GRAS 93 fshltaNqaIleavege.......ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg.....skeeleetgerLakfAee 171
f+h++aN aIle++ ++ +r+Hi+D++ + ++QWp+Ll+aLa+R+ +++p+l iT+v+s++++ ++ ++e+g+r++kfA+
GRMZM2G172657_P01 278 FGHVAANGAILESFLEAaaaspepQRLHILDLSNTFCTQWPTLLEALATRSaDDTPHLSITTVVSSAPSaptaaVQRVMREIGQRMEKFARL 369
************9987777888899**************************889**********9888889999999*************** PP
GRAS 172 lgvpfefnvlvak.rledleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse........ 251
+gvpf+f+++++ +l+ l+l++L+++ ala+n+v +l ++ ++ + rd++ +++l P+vv+vve+ead+ +
GRMZM2G172657_P01 370 MGVPFSFRAVHHAgDLAGLDLDALDLRDggaTTALAINCVNSLRGVV--PGGARR-RDAFAASLRRLDPRVVTVVEEEADLVAFdpgapees 458
*********97767**************888889************9..555555.99********************99844446888999 PP
GRAS 252 .....sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqak 338
Fl+ f e l+++sa +dsle+++p++s+er +Er gr+iv++v+c +e+ er+et+++W +r++++GF+pv++se++a++++
GRMZM2G172657_P01 459 gdteaAFLKVFGEGLRFFSAYMDSLEESFPKTSNERLALERG-AGRAIVDLVSCPASESMERRETAASWARRMRSSGFSPVAFSEDVADDVR 549
99999*************************************.************************************************* PP
GRAS 339 lllrkvksdgyrveee.......sgslvlgWkdrpLvsvSaWr 374
+llr++ +g+++ + + ++l Wk++pLv++SaWr
GRMZM2G172657_P01 550 SLLRRYR-EGWSMRDAglddsaaGAGVFLAWKEQPLVWASAWR 591
******9.88888844444455355566**************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| Sequence ? help Back to Top |
| Protein Sequence Length: 592 aa
Download sequence Send
to blast |
MDTLFRLVSL QASEQQQQQS ASYNSRSTTS SGSRSSSHQT NASYNYYYHS NSSGGGGGQY 60
YYGQQHPHQH QHQQYYLEPY QQEECGNTHH LYMDEDFSSS SSSRQHFHSH GAVVQPPTSS 120
TATPTAPTPS LSTSSTAAGA AHALFEAADL SFPPDLNLDF SSPASSSGGG AASSAAVGGG 180
GGGRWASQLL LECARAVAGR DSQRVQQLMW MLNELASPYG DVEQKLASYF LQGLFARLTA 240
SGPRTLRTLA AASDRNTSFD STRRTALRFQ ELSPWSSFGH VAANGAILES FLEAAAASPE 300
PQRLHILDLS NTFCTQWPTL LEALATRSAD DTPHLSITTV VSSAPSAPTA AVQRVMREIG 360
QRMEKFARLM GVPFSFRAVH HAGDLAGLDL DALDLRDGGA TTALAINCVN SLRGVVPGGA 420
RRRDAFAASL RRLDPRVVTV VEEEADLVAF DPGAPEESGD TEAAFLKVFG EGLRFFSAYM 480
DSLEESFPKT SNERLALERG AGRAIVDLVS CPASESMERR ETAASWARRM RSSGFSPVAF 540
SEDVADDVRS LLRRYREGWS MRDAGLDDSA AGAGVFLAWK EQPLVWASAW RP
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: In P3 leaf primordium, expressed ubiquitously in the L1 layer and in the inner cells at lower levels. Not limited to the developing stomata until the last cell divisions. {ECO:0000269|PubMed:12974810}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in leaves and roots. Detected in the stele, the endodermis and part of the cortex. {ECO:0000269|PubMed:12974810, ECO:0000269|PubMed:17446396}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor required for the asymmetric cell division involved in radial pattern formation in roots. Essential for both cell division and cell specification. {ECO:0000269|PubMed:17446396}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT067328 | 0.0 | BT067328.1 Zea mays full-length cDNA clone ZM_BFc0012E13 mRNA, complete cds. |
