PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G170079_P02 | ||||||||
Common Name | ZEAMMB73_256741, Zm.146111 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bZIP | ||||||||
Protein Properties | Length: 210aa MW: 21752.8 Da PI: 5.3205 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 36.7 | 8.8e-12 | 154 | 198 | 4 | 48 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 kr +r NR +A+rsR RK+++i eLe+ v +L++e + L + GRMZM2G170079_P02 154 PKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQNEVSVLSPR 198 5999*********************************98877655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 4.0E-8 | 151 | 210 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.048 | 153 | 210 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 8.4E-14 | 155 | 207 | No hit | No description |
Pfam | PF00170 | 2.8E-10 | 155 | 200 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 4.36E-12 | 155 | 209 | No hit | No description |
CDD | cd14703 | 1.73E-26 | 156 | 207 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 158 | 173 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MAQQLPPRIP TEVHHWPEGG QHGAAAAWAD DFAEFAAARR GAHRRSLSDS VAFVEVAPAD 60 GGAGEFDRLD DDQLLSMFPP DEAGGGGSSA AGSENGGSSD SDGDKRGARG GPAGGAPSTG 120 SGGGEQNGVV DAQAPAATGG QAAVVASTEL IRDPKRVKRI LANRQSAQRS RVRKLQYISE 180 LERSVTTLQN EVSVLSPRVA FLDQQRTILS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.75281 | 1e-111 | sheath| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G170079 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, shoots and panicles. {ECO:0000269|PubMed:18065552}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription regulator. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G170079_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX469927 | 0.0 | JX469927.1 Zea mays subsp. mays clone UT3185 bZIP-type transcription factor mRNA, partial cds. | |||
GenBank | KJ726785 | 0.0 | KJ726785.1 Zea mays clone pUT1861 bZIP transcription factor (bZIP20) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008657219.1 | 1e-147 | basic leucine zipper 6 | ||||
Swissprot | Q5JMK6 | 9e-68 | BZP06_ORYSJ; Basic leucine zipper 6 | ||||
TrEMBL | A0A1D6GBD7 | 1e-146 | A0A1D6GBD7_MAIZE; BZIP-type transcription factor | ||||
STRING | GRMZM2G170079_P02 | 1e-147 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP126 | 17 | 181 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58120.1 | 3e-28 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G170079_P02 |
Publications ? help Back to Top | |||
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