PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G169820_P01
Common NameZm.41336
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ARF
Protein Properties Length: 1086aa    MW: 120169 Da    PI: 6.2458
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G169820_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.41e-21131232199
                        EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                        f+k+lt sd++++g +++p++ ae++      + +++  ++l+ +d++   W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F +dg
  GRMZM2G169820_P01 131 FCKTLTASDTSTHGGFSVPRRAAERIfphldfS-VQPPAQELQARDLHDAIWTFRHIYRGQPKRHLLTTGWSLFVSGKRLLAGDSVLFIRDG 221
                        99*****************************73.3344459************************************************666 PP

                        SSEE..EEEEE-S CS
                 B3  87 rsefelvvkvfrk 99 
                          +++l+++++r+
  GRMZM2G169820_P01 222 --RQQLLLGIRRA 232
                        ..55569999997 PP
2Auxin_resp119.82.2e-39257340183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        aahaa+++s F+v+YnPras+seFv++++k++ka++ +++s+GmRf+m+fete+s++rr++Gt++g+sd+dp+rW+nS+Wr+++
  GRMZM2G169820_P01 257 AAHAAANNSQFTVFYNPRASPSEFVIPFAKYQKAVYsNQLSLGMRFRMMFETEESATRRYMGTITGISDMDPLRWKNSQWRNIQ 340
                        79*********************************989*******************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.7E-40120260IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.6E-38124246IPR015300DNA-binding pseudobarrel domain
CDDcd100173.58E-18130222No hitNo description
SMARTSM010191.0E-20131233IPR003340B3 DNA binding domain
PROSITE profilePS5086311.547131233IPR003340B3 DNA binding domain
PfamPF023621.6E-19131232IPR003340B3 DNA binding domain
PfamPF065072.8E-34257340IPR010525Auxin response factor
PfamPF023097.0E-109611052IPR033389AUX/IAA domain
PROSITE profilePS5174527.0029681052IPR000270PB1 domain
SuperFamilySSF542772.26E-79801047No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1086 aa     Download sequence    Send to blast
MEAPGTSSGG AGGEGAGGTK VNEELWYACA GPLVALPPAG SLVVYFPQGH SEQVAASMRK  60
DADAKIPSYP NLSSKLICIL RSVTMLADPD TDEVYARMTL QPVSNVTHCD KETLLATELA  120
LKQTRPQTEF FCKTLTASDT STHGGFSVPR RAAERIFPHL DFSVQPPAQE LQARDLHDAI  180
WTFRHIYRGQ PKRHLLTTGW SLFVSGKRLL AGDSVLFIRD GRQQLLLGIR RANRQPVNLS  240
SSVLSSDSMH IGILAAAAHA AANNSQFTVF YNPRASPSEF VIPFAKYQKA VYSNQLSLGM  300
RFRMMFETEE SATRRYMGTI TGISDMDPLR WKNSQWRNIQ VAWDEAAPSE RRTRVSLWEV  360
EPVIAPFFIY PSPLFTAKRP RQPGVTDDDS SEMDNLFKRT MPWFGEEVGK RDLSTQNGLV  420
PGLSLVQWMN MQHNPSLANT VMQPELLNSL AGKPVQTLAA ADLSRQISFQ PQFLQQNNIQ  480
FNTSLLPPQN QQTEQLANVI ATPNQLGSVI VPQKAVQNSS SEQKQNLVTQ PLQVSQPMVS  540
VAQPQLVHTQ LQQPQVVLQA QPQQPQVIVQ AQLQQQQPLV QNHTTIQSGL QQIQLLQQQQ  600
VQQSVQEQQQ IKIQPFQVPN DANMVTQLSD QMKIQLLKAL QPQQPLVMEQ QKMIFDLQQQ  660
AVNSQSTAQQ CSQVATQVVG LHSSSTNQYP TQQKTQPLKT FQDFPGNAVS IVKPEIVTSV  720
GARSLHVPGG VQSMKMDEVP SSSTSPSTNN NPVILRSTPS SSKNQCLPTA AKAPQSSVVL  780
GSTLEQGMKP CDSTQHPMVI PKLAEERPAT GQDYMNSTQL DYLDTSSSAT SVCLSQADGS  840
LQQSFPPSSF NQHQPLREAV PDSEFEVTDA GNNFLFGANI DGHMEPLNED DLLGTAFEAD  900
KYMEQMPGNG ISNYISSKDS QQELSSSMIS HPFGVADIAF NSIDSSINDI QFLNRNSRAP  960
GPVQQRMRTY TKVHKRGAVG RSIDINRYSG YDELKHDVAR MFGIEGQLSD QNRVGWKLVY  1020
EDHEKDVLLV GDDPWEDFVN CVRCIRILSP QEERQMRLAS DYGDSFLGNQ ACSSSDGGRP  1080
WRVTGD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1572136151388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.938760.0cell culture| cell lignification| endosperm| glume| leaf| meristem| ovary| root| sheath| shoot| silk| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G169820
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G169820_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under dark condition. Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7279640.0KJ727964.1 Zea mays clone pUT6076 ARF transcription factor (ARF1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001352406.10.0auxin response factor 21
SwissprotQ6YZW00.0ARFU_ORYSJ; Auxin response factor 21
TrEMBLA0A1D6KJC50.0A0A1D6KJC5_MAIZE; Auxin response factor
STRINGGRMZM2G169820_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140935106
Representative plantOGRP41931125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]