PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G168229_P01
Common NameLOC100193719, ZEAMMB73_416940, Zm.34753
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family SBP
Protein Properties Length: 406aa    MW: 42601.4 Da    PI: 8.7377
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G168229_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP127.65e-40202277176
                        --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
                SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                        +Cq+egC+adls ak+yhrrhkvCe+h+ka++v+++g++qrfCqqCsrfh l efDe+krsCr+rL +hn+rrrk+
  GRMZM2G168229_P01 202 RCQAEGCKADLSAAKHYHRRHKVCEFHTKASAVAAAGKQQRFCQQCSRFHVLAEFDEAKRSCRKRLTEHNRRRRKP 277
                        6*************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.4E-33195264IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.052200277IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.44E-37201278IPR004333Transcription factor, SBP-box
PfamPF031102.9E-30203276IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MMMMNTSAAM SPPSTDVVVD DFSLGAMHQP YVVGFHADAG MRIMPSVVVD RPLLQQNTDL  60
LEEYDSFDFA ATGLLPLPFQ ELPGLLPPAN YLPLPTPSMA MSPPSLRLLT LPGVPVPTAA  120
ADVVYGGLGG GGAGGPSFLK REHGVGSGGG RIGGLNLGRR TYFTPAAVDR LLGGGLGGVG  180
LGMSVLGLGV GAAHHHQQQP PRCQAEGCKA DLSAAKHYHR RHKVCEFHTK ASAVAAAGKQ  240
QRFCQQCSRF HVLAEFDEAK RSCRKRLTEH NRRRRKPISA QGNNDHSSPP PPAPKKADTC  300
ITTSYNDDPK IAGASNTAAA ISPNGGSGGG SCLDVLDNGQ ITSSATAAAP TALSLAAPPP  360
PLHHELHHEK DGSLDSVLMQ RRVHYWSMAG GGTTTTKSIA VSSPRW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-322032761184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1259276KRSCRKRLTEHNRRRRKP
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G168229
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16861571}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G168229_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0360580.0BT036058.1 Zea mays full-length cDNA clone ZM_BFb0093L04 mRNA, complete cds.
GenBankEU9602680.0EU960268.1 Zea mays clone 223037 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001132280.10.0SBP-domain protein2
SwissprotQ0E3F84e-52SPL5_ORYSJ; Squamosa promoter-binding-like protein 5
TrEMBLB4FG200.0B4FG20_MAIZE; SBP-domain protein2
STRINGGRMZM2G168229_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23753593
Representative plantOGRP9717230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.12e-40squamosa promoter binding protein-like 8
Publications ? help Back to Top
  1. McGonigle B,Keeler SJ,Lau SM,Koeppe MK,O'Keefe DP
    A genomics approach to the comprehensive analysis of the glutathione S-transferase gene family in soybean and maize.
    Plant Physiol., 2000. 124(3): p. 1105-20
    [PMID:11080288]
  2. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]