PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G164359_P01 | ||||||||
Common Name | LOC100279943, ZEAMMB73_483690 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | C3H | ||||||||
Protein Properties | Length: 331aa MW: 36134 Da PI: 7.8399 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 38.2 | 2.5e-12 | 190 | 215 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 y +C+++ +tG+C yGd+CkF+H+ GRMZM2G164359_P01 190 YQPDICKDYKETGYCGYGDSCKFMHD 215 67789********************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 1.83E-9 | 187 | 220 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.878 | 189 | 217 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.1E-7 | 189 | 216 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.5E-10 | 190 | 215 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.6E-12 | 190 | 220 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:3.30.40.10 | 8.6E-14 | 253 | 313 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
SuperFamily | SSF57850 | 1.14E-13 | 265 | 308 | No hit | No description |
Pfam | PF13920 | 1.7E-8 | 265 | 306 | No hit | No description |
SMART | SM00184 | 5.2E-5 | 266 | 303 | IPR001841 | Zinc finger, RING-type |
PROSITE profile | PS50089 | 10.689 | 266 | 304 | IPR001841 | Zinc finger, RING-type |
CDD | cd00162 | 9.26E-8 | 266 | 307 | No hit | No description |
PROSITE pattern | PS00518 | 0 | 281 | 290 | IPR017907 | Zinc finger, RING-type, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016020 | Cellular Component | membrane | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MADGGNCGPG GGNASAPVCS FVRKPPKNIR KRPAAPAGSD DDDDGGGGAL AAARSKKGPP 60 SSTAGKLVFS TAGASSEAPR FQYESSRTIQ STDTRATATL ETETEFDRDA RSIRERQLKQ 120 AEESLKKNPS AVAASASAST AGEVYKGIHG YTDYKAGFRR EHTVSSEKAG GSHGPLRASA 180 HIRLSQRFDY QPDICKDYKE TGYCGYGDSC KFMHDRGDYK SGWQLEKEYE EAEKARKRRI 240 AMGGGGESDD EAADDEDEEE ALPFACFICR EPFVDPVVTK CKHYFCEHCA LKHHSKNKKC 300 YVCNKPTLGI FNAAQEIRKK MAQDKKQQQQ E |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5z56_M | 3e-62 | 85 | 321 | 105 | 317 | RING finger protein 113A |
5z58_M | 3e-62 | 85 | 321 | 105 | 317 | RING finger protein 113A |
6ff4_t | 3e-62 | 85 | 321 | 105 | 317 | RING finger protein 113A |
6ff7_t | 3e-62 | 85 | 321 | 105 | 317 | RING finger protein 113A |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.26757 | 0.0 | ear| meristem| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G164359 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G164359_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT041524 | 0.0 | BT041524.1 Zea mays full-length cDNA clone ZM_BFc0009J09 mRNA, complete cds. | |||
GenBank | BT055174 | 0.0 | BT055174.1 Zea mays full-length cDNA clone ZM_BFc0109L02 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001146365.1 | 0.0 | putative RING zinc finger domain superfamily protein | ||||
Swissprot | Q6K4V3 | 1e-164 | C3H15_ORYSJ; Zinc finger CCCH domain-containing protein 15 | ||||
TrEMBL | B4FWN6 | 0.0 | B4FWN6_MAIZE; Zinc finger CCCH domain-containing protein 1 | ||||
TrEMBL | K4JFL0 | 0.0 | K4JFL0_MAIZE; C3H-type transcription factor (Fragment) | ||||
STRING | GRMZM2G164359_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8071 | 36 | 45 | Representative plant | OGRP5896 | 17 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01350.1 | 1e-108 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G164359_P01 |
Entrez Gene | 100279943 |
Publications ? help Back to Top | |||
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