PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G163200_P01 | ||||||||
Common Name | GATA24, LOC107228387, Zm.87116 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | GATA | ||||||||
Protein Properties | Length: 422aa MW: 43432.3 Da PI: 5.7527 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 56 | 5.2e-18 | 339 | 372 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C++C+ kTp+WR gp g+ktLCnaCG++y++ + GRMZM2G163200_P01 339 CTHCQIEKTPQWRAGPLGPKTLCNACGVRYKSGR 372 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 1.9E-14 | 331 | 394 | No hit | No description |
SMART | SM00401 | 3.5E-16 | 333 | 383 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.055 | 333 | 369 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 3.4E-14 | 337 | 370 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.95E-14 | 338 | 395 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 339 | 364 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.2E-15 | 339 | 372 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 422 aa Download sequence Send to blast |
MAGGGFVEDM MREQSLLEAT CGDLFDHIDD LLDFPNEDSA AAVLLLDAPA PGSPLSARII 60 DVGRAGNALA PPAAPAQHDA SASAFFAAAG NDVFDTKDVV GAHIGSCDDI DMDMAQLEWL 120 SGLFDDASIP HEPVFPGATA GGAAPIMKSS ALAAGALLPQ DKMEDALLFR SSSPISVLEH 180 GSGGSGSASA TGSASSSSSS ASSSSESFSG SGSGSGGGHV WSAPVSPRPA PPPALVIPAR 240 ARSKRSRSSA FTGAAARAGA ETPTILVPTP MYSSGSAHSD PESIAESSPH PAPPMKKKKK 300 AKKPVVPAPA ASSDDNDGDA DYEEGGEQTE PQGGAVRRCT HCQIEKTPQW RAGPLGPKTL 360 CNACGVRYKS GRLFPEYRPA ASPTFVPSIH SNSHKRVVEM RQKAVRSGDP SCDLLHFIRR 420 RD |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.97844 | 0.0 | cell culture| endosperm| glume| meristem| ovary |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G163200 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G163200_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT054121 | 0.0 | BT054121.2 Zea mays full-length cDNA clone ZM_BFb0117M13 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001307377.1 | 0.0 | uncharacterized protein LOC107228387 | ||||
Refseq | XP_020393148.1 | 0.0 | uncharacterized protein LOC107228387 isoform X1 | ||||
Refseq | XP_020393149.1 | 0.0 | uncharacterized protein LOC107228387 isoform X1 | ||||
Refseq | XP_020393150.1 | 0.0 | uncharacterized protein LOC107228387 isoform X1 | ||||
TrEMBL | A0A060D417 | 0.0 | A0A060D417_MAIZE; C2C2-GATA transcription factor (Fragment) | ||||
STRING | GRMZM2G163200_P03 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5169 | 34 | 51 | Representative plant | OGRP68 | 17 | 287 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54810.2 | 8e-37 | GATA family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G163200_P01 |
Entrez Gene | 107228387 |
Publications ? help Back to Top | |||
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