PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G162709_P02
Common NameLOC100193925
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB
Protein Properties Length: 334aa    MW: 36251.3 Da    PI: 5.3618
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G162709_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.62.5e-172774148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       rg+WT eEd ll ++++ +G g+W++ ar+ g++Rt+k+c++rw++yl
  GRMZM2G162709_P02 27 RGPWTLEEDNLLMNYIACHGEGRWNLLARCSGLKRTGKSCRLRWLNYL 74
                       89********************************************97 PP
2Myb_DNA-binding49.31.1e-1581123246
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        g+  +eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  GRMZM2G162709_P02  81 GNLAPEEQLLILELHSKWGNR-WSRIAQHLP-GRTDNEIKNYWRT 123
                        66669****************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.5112274IPR017930Myb domain
SuperFamilySSF466893.03E-3024121IPR009057Homeodomain-like
SMARTSM007171.2E-132676IPR001005SANT/Myb domain
PfamPF002495.6E-152774IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-222881IPR009057Homeodomain-like
CDDcd001676.88E-112974No hitNo description
PROSITE profilePS5129424.03475129IPR017930Myb domain
SMARTSM007171.4E-1379127IPR001005SANT/Myb domain
PfamPF002491.4E-1481123IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2282126IPR009057Homeodomain-like
CDDcd001671.00E-1185125No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MEGAMTTRSK HRRHEEDQEM TMVELRRGPW TLEEDNLLMN YIACHGEGRW NLLARCSGLK  60
RTGKSCRLRW LNYLKPDIKR GNLAPEEQLL ILELHSKWGN RWSRIAQHLP GRTDNEIKNY  120
WRTRLLEKTM AAAAASTSGE VLLPPLPPPP QLHPSRVAGL LASSSSSPVQ RDTSDSDYLP  180
QRYHHHPVDP SPSASSTVSS SAALAPVPCF SELSWVDQYG YGPYYSYGAN LDDGAGVFDD  240
SAALEEGLGL DALDLGPADD SDVAHSDATL LDYLNSACAG GGTMMMAVTG GGGGVQSSGC  300
GATGGADADY RPSPCTWRTD ELGDPRQHQW GGGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A7e-26241281104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G162709
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves and flowers. {ECO:0000269|PubMed:19529828}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G162709_P02
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0363130.0BT036313.1 Zea mays full-length cDNA clone ZM_BFb0106K23 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001334575.10.0uncharacterized protein LOC100193925
SwissprotQ9C9G73e-60MYB62_ARATH; Transcription factor MYB62
TrEMBLB4FGS50.0B4FGS5_MAIZE; Uncharacterized protein
STRINGGRMZM2G162709_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.15e-61myb domain protein 62
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]