PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G160838_P01
Common NameLOC100193234
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB
Protein Properties Length: 330aa    MW: 35424.1 Da    PI: 9.5414
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G160838_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.33e-1782129148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        +g+WT+eEd++l+ +++ +G g+W++ ++  g+ R++k+c++rw +yl
  GRMZM2G160838_P01  82 KGAWTKEEDQRLIAYIRAHGEGSWRSLPKAAGLLRCGKSCRLRWMNYL 129
                        79******************************99************97 PP
2Myb_DNA-binding50.83.9e-16135179147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        rg++T ++del+++++++lG++ W++Ia  ++ gRt++++k++w+++
  GRMZM2G160838_P01 135 RGNFTGDDDELIIKLHALLGNK-WSLIAGQLP-GRTDNEIKNYWNTH 179
                        89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-2373132IPR009057Homeodomain-like
PROSITE profilePS5129417.00177129IPR017930Myb domain
SuperFamilySSF466894.49E-2981176IPR009057Homeodomain-like
SMARTSM007171.7E-1381131IPR001005SANT/Myb domain
PfamPF002491.3E-1582129IPR001005SANT/Myb domain
CDDcd001674.09E-1184129No hitNo description
PROSITE profilePS5129426.521130184IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.0E-26133184IPR009057Homeodomain-like
SMARTSM007171.6E-15134182IPR001005SANT/Myb domain
PfamPF002493.5E-14135179IPR001005SANT/Myb domain
CDDcd001671.55E-11137180No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MYALRCTCTA PPCLSPPFCP GLSLSASPCY NSNQTKPNQS SGGASTQTQG EARASKHTRE  60
QRAGRQAAMG RSPCCEKAHT NKGAWTKEED QRLIAYIRAH GEGSWRSLPK AAGLLRCGKS  120
CRLRWMNYLR PDLKRGNFTG DDDELIIKLH ALLGNKWSLI AGQLPGRTDN EIKNYWNTHI  180
KRKLLSRGID PQTHRPLSGG AGSALTTTSS TAGFPSPAPA SRPTPTPPPA VVVPPNAIFA  240
RPAPSEDGHS SSGASTDAPR CPDLNLDLDL SVGPPPKTPA ATPASQQRRR TTICLCYHLG  300
VRGGEACSCE TASSLAGFRF LRPLEEGQYI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28821847108B-MYB
1gv2_A2e-28821844105MYB PROTO-ONCOGENE PROTEIN
1h8a_C4e-288118426128MYB TRANSFORMING PROTEIN
1mse_C2e-28821844105C-Myb DNA-Binding Domain
1msf_C2e-28821844105C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.138920.0ovary
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G160838
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269|PubMed:1840903}.
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, seed pods and flowers. {ECO:0000269|PubMed:1840903}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G160838_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0354470.0BT035447.1 Zea mays full-length cDNA clone ZM_BFb0063G11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001131856.10.0uncharacterized protein LOC100193234
SwissprotP813933e-93MYB08_ANTMA; Myb-related protein 308
TrEMBLA0A3L6FJQ80.0A0A3L6FJQ8_MAIZE; Myb-related protein 308
STRINGGRMZM2G160838_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.12e-84myb domain protein 6
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]