PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GRMZM2G158717_P02 | ||||||||
Common Name | LOC103647922, LOC542193, Zm.19855 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
|
||||||||
Family | VOZ | ||||||||
Protein Properties | Length: 420aa MW: 46618.8 Da PI: 6.4054 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 394.3 | 2.9e-121 | 83 | 300 | 1 | 217 |
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalne.glpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwn 91 p+ps++lgpkcalwdc rpa g+e+ dyc+ +ha laln+ gl+g++pv+rp+gidlkdg+lfaal akvqgk+vgip+c gaat+kspwn GRMZM2G158717_P02 83 PSPSQYLGPKCALWDCGRPAGGTEDSGDYCNPYHAGLALNDdGLLGIRPVMRPRGIDLKDGPLFAALIAKVQGKNVGIPVCGGAATSKSPWN 174 89**************************************9799************************************************ PP VOZ 92 aaelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalaly 183 a+elfdlsllege++rewlffd+prrafesgnrkqrslpdy grgwhesrk vmk+f+glkrsyymdpqpsss+ewhl+eyein +dalaly GRMZM2G158717_P02 175 APELFDLSLLEGESLREWLFFDTPRRAFESGNRKQRSLPDYGGRGWHESRKLVMKDFAGLKRSYYMDPQPSSSHEWHLFEYEINASDALALY 266 ******************************************************************************************** PP VOZ 184 rlelklvdekks.akgkvskdsladlqkklgrlta 217 rle+k++d kk ak+k++ ++l+++++++grlta GRMZM2G158717_P02 267 RLEYKSSDPKKGaAKSKLA-SPLNEIRQRMGRLTA 300 ********99962677775.79***********97 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 420 aa Download sequence Send to blast |
MYYTDYELNI DDFLCGDGYK INISGSNEDQ FNNLHGIGQL GHQQFDLPLD LPPTHSYADA 60 NNSEQNTGDV FVHMSDLLTT IWPSPSQYLG PKCALWDCGR PAGGTEDSGD YCNPYHAGLA 120 LNDDGLLGIR PVMRPRGIDL KDGPLFAALI AKVQGKNVGI PVCGGAATSK SPWNAPELFD 180 LSLLEGESLR EWLFFDTPRR AFESGNRKQR SLPDYGGRGW HESRKLVMKD FAGLKRSYYM 240 DPQPSSSHEW HLFEYEINAS DALALYRLEY KSSDPKKGAA KSKLASPLNE IRQRMGRLTA 300 DSPVENKRTA RSKPKANQNQ KDTNANTRPH VNTPNQVNAP NAYQTTQQVN QMAFLNGNVV 360 YGPHLPHSES VVYGPHLPHS ENVVYGPHLP HSENVVYGPH LPQGYSAEGS SFFWNPSDGT |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Zm.19855 | 0.0 | aerial organ| ear| embryo| endosperm| leaf| meristem| ovary| shoot |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
Expression Atlas | GRMZM2G158717 |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. Expressed in the vascular bundles of various tissues, specifically in the phloem. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GRMZM2G158717_P02 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT039629 | 0.0 | BT039629.1 Zea mays full-length cDNA clone ZM_BFc0035D15 mRNA, complete cds. | |||
GenBank | BT055284 | 0.0 | BT055284.1 Zea mays full-length cDNA clone ZM_BFc0117C20 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001105277.2 | 0.0 | expressed protein DH12 | ||||
Swissprot | Q9SGQ0 | 1e-106 | VOZ1_ARATH; Transcription factor VOZ1 | ||||
TrEMBL | B4FR91 | 0.0 | B4FR91_MAIZE; Transcription factor VOZ1 | ||||
STRING | GRMZM2G111696_P01 | 0.0 | (Zea mays) | ||||
STRING | GRMZM2G158717_P03 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G28520.2 | 1e-103 | vascular plant one zinc finger protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | GRMZM2G158717_P02 |
Entrez Gene | 103647922 | 542193 |
Publications ? help Back to Top | |||
---|---|---|---|
|