PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G158700_P02 | ||||||||
Common Name | Zm.13888 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | MYB | ||||||||
Protein Properties | Length: 294aa MW: 32597 Da PI: 7.9063 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.5 | 2.7e-17 | 22 | 69 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT +Ed ll+ v+ +G g+W+ ar g++Rt+k+c++rw++yl GRMZM2G158700_P02 22 RGPWTVDEDALLAAHVAAHGEGRWNELARDAGLRRTGKSCRLRWLNYL 69 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.9 | 3.7e-16 | 75 | 118 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg +T+ E++l++d++ ++G++ W++Ia++++ gRt++++k++w++ GRMZM2G158700_P02 75 RGGFTPREQLLILDLHSRWGNR-WSKIAAHLP-GRTDNEVKNYWRT 118 788*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.918 | 17 | 73 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.36E-30 | 20 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-14 | 21 | 71 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-15 | 22 | 69 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-20 | 23 | 76 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.36E-5 | 24 | 69 | No hit | No description |
SMART | SM00717 | 2.7E-14 | 74 | 122 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 17.08 | 74 | 124 | IPR017930 | Myb domain |
Pfam | PF00249 | 7.5E-15 | 75 | 118 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-23 | 77 | 123 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.16E-11 | 78 | 118 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MVRRAIGRRR RDDDAAAAEL RRGPWTVDED ALLAAHVAAH GEGRWNELAR DAGLRRTGKS 60 CRLRWLNYLR PGVRRGGFTP REQLLILDLH SRWGNRWSKI AAHLPGRTDN EVKNYWRTRV 120 QKHAKQLHCD VGSRRFHDAM RNLWMPRLIE RIHADDSAAV AANATGDVSH FYSASPSHEL 180 SSSSQPAPAY RNAAPNGSCA RAPSPDASCV TGPSSWSREA SPASQFQSSG STIAGPSTST 240 ELCQNGCSSA TSVDMFDESW SELLARANHD DTDFGLGETG DNWWGLEDIW EQPL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-24 | 19 | 116 | 24 | 120 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G158700 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in the jasmonate-dependent defense responses to the rice blast fungus Magnaporthe oryzae. Does not seem to function in the salicylic acid-dependent signaling pathway. {ECO:0000269|PubMed:11310740}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G158700_P02 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA), wounding and infection by the fungal pathogen Magnaporthe oryzae. {ECO:0000269|PubMed:11310740}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU973387 | 0.0 | EU973387.1 Zea mays clone 397963 cpm7 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001152038.1 | 0.0 | uncharacterized protein LOC100285675 | ||||
Swissprot | Q2QZJ8 | 4e-80 | JAMYB_ORYSJ; Transcription factor JAMYB | ||||
TrEMBL | A0A3L6FHT3 | 0.0 | A0A3L6FHT3_MAIZE; Transcription factor MYB62 | ||||
TrEMBL | B6U822 | 0.0 | B6U822_MAIZE; Cpm7 | ||||
STRING | GRMZM2G158700_P01 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G48000.1 | 1e-70 | myb domain protein 112 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G158700_P02 |
Publications ? help Back to Top | |||
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