PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G157306_P02
Common NameLOC100192961, ZEAMMB73_377524
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 343aa    MW: 36137.9 Da    PI: 10.276
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G157306_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding461.3e-1499143347
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        +WT+eE+  ++ + ++lG+g+W+ Ia+ + ++Rt+ q+ s+ qky
  GRMZM2G157306_P02  99 PWTEEEHRTFLAGLEKLGKGDWRGIAKNFVTTRTPTQVASHAQKY 143
                        8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.96892148IPR017930Myb domain
SuperFamilySSF466891.22E-1793148IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-1895147IPR006447Myb domain, plants
SMARTSM007171.4E-1196146IPR001005SANT/Myb domain
PfamPF002492.0E-1299143IPR001005SANT/Myb domain
CDDcd001672.88E-1099144No hitNo description
Gene3DG3DSA:1.10.10.603.3E-1299142IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MPRDSRPAGM RLFGVTIAPA PEADPPVRDP SPNPPVAARE DVMRKCKSMG NLAALGAVVD  60
GGGGGADGGG AGDGYLSDGG LMQSSGKRRR AQERKKAVPW TEEEHRTFLA GLEKLGKGDW  120
RGIAKNFVTT RTPTQVASHA QKYFLRQTNP NKKKRRSSLF DMMPRELSPA PNCPILPPSM  180
AKVHDVVAMT KQLQNSNLEG TSSSNAASQV GRDLPPVPSF KATNMDPSFS KFSHMERVWR  240
TPYPFGPVPR APEGTPSPTP AAAAAAAAAA ANAAVPVSQA NLTTACTSNT FLSQPKPSDT  300
PSLPPKGGPP SEEDGLELTV APPSQQNMTN MSSQNAVGVI QVI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151155KKKRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.963920.0ear| embryo| meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G157306
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G157306_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0350930.0BT035093.1 Zea mays full-length cDNA clone ZM_BFb0039D19 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001131609.10.0uncharacterized protein LOC100192961
TrEMBLB4FDA50.0B4FDA5_MAIZE; Myb-like transcription factor family protein
STRINGGRMZM2G157306_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58583652
Representative plantOGRP1297345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.19e-39MYB_related family protein