PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G156348_P01
Common NameLOC100283016, THX23
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family Trihelix
Protein Properties Length: 273aa    MW: 32311.3 Da    PI: 8.4895
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G156348_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix76.73.7e-2420102186
           trihelix   1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                        +W  qe+++Li ar eme++  + ++++k+ We+v++++rerg++r+++qCk+kw+nl +ryk  ++++ ++     ++cp+f++l+
  GRMZM2G156348_P01  20 QWGAQETRELIMARGEMERETVAaRRSAKTMWEAVAARLRERGYRRTAEQCKCKWKNLVNRYKGKETSDPEN----GRQCPFFEELH 102
                        7*****************9877626899************************************99999974....678*****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122031.10E-171985No hitNo description
PfamPF138376.0E-2220102No hitNo description
Gene3DG3DSA:1.10.10.606.0E-42079IPR009057Homeodomain-like
PROSITE profilePS500907.5612178IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MMEAGGAGAG AGGRDERVPQ WGAQETRELI MARGEMERET VAARRSAKTM WEAVAARLRE  60
RGYRRTAEQC KCKWKNLVNR YKGKETSDPE NGRQCPFFEE LHGVFTERAR NMQQQLLESE  120
SGVSVKTKLK RPGGDWSSRE SDDKEDDGEE SDDEKPMHNR KRKADDKKQQ HQRMSEKSRT  180
GISSIHELLQ DFLVQQQHID VRWREMIERR AQERVVFEQQ WRLTMQRLEQ ERLLLEHSWM  240
EREERRRMKE EARAEKRDAL LTTLLNKLLQ EDL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.971100.0meristem| ovary| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G156348
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G156348_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9631540.0EU963154.1 Zea mays clone 258384 transcription factor GT-3b mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001149390.10.0uncharacterized protein LOC100283016
TrEMBLB6TDT90.0B6TDT9_MAIZE; Transcription factor GT-3b
STRINGGRMZM2G156348_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106883037
Representative plantOGRP22621535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38250.18e-26Trihelix family protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]