PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G154320_P01
Common NameLOC103643737
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family LBD
Protein Properties Length: 281aa    MW: 30137.8 Da    PI: 6.9203
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G154320_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260130.57e-4171061100
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                        +CaaCk+lrrkC+++Cv+apyfp ++p kfa vh++FGasnv+kll++l++ +reda++sl+yeA+ar+rdPvyG+v+ i+ lq ++++++ 
  GRMZM2G154320_P01   7 PCAACKLLRRKCTQGCVFAPYFPPDNPGKFASVHRVFGASNVSKLLNDLDQLQREDAVNSLAYEADARIRDPVYGCVAYISVLQMKIKRVRD 98 
                        7******************************************************************************************* PP

             DUF260  93 elallkee 100
                        e+a +++e
  GRMZM2G154320_P01  99 EIANARKE 106
                        ***99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.1536107IPR004883Lateral organ boundaries, LOB
PfamPF031951.6E-407104IPR004883Lateral organ boundaries, LOB
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0025142anatomyleaf tip
PO:0001052developmental stagevascular leaf expansion stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MSSSNSPCAA CKLLRRKCTQ GCVFAPYFPP DNPGKFASVH RVFGASNVSK LLNDLDQLQR  60
EDAVNSLAYE ADARIRDPVY GCVAYISVLQ MKIKRVRDEI ANARKELAAY IGTAAFAPYV  120
ATPQYHHHQY AAGAVPLAVG VGPQHGHPHH QQQQIMVHQH LHHQQQMAAA AEVQQQLAVA  180
VEVAREQDLM MRQAAVYAHA VPSGGPTVAV VPPDALPYEG GFLFQQQPPP SQAQTAVALT  240
YQMEQSPPSS SSGQSHPEVS QQHNTDGSDE GSGGGGVVPP A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-4641108114LOB family transfactor Ramosa2.1
5ly0_B2e-4641108114LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G154320
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G154320_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0633093e-89BT063309.1 Zea mays full-length cDNA clone ZM_BFc0051C02 mRNA, complete cds.
GenBankKJ7277243e-89KJ727724.1 Zea mays clone pUT5664 LOB transcription factor (LOB38) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008665134.10.0LOB domain-containing protein 36
TrEMBLA0A1D6KXT40.0A0A1D6KXT4_MAIZE; LOB domain-containing protein 28
STRINGGRMZM2G154320_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61433456
Representative plantOGRP6016318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66870.11e-56ASYMMETRIC LEAVES 2-like 1