PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G152319_P02
Common NameLOC100383221, ZEAMMB73_750509
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 746aa    MW: 83164.2 Da    PI: 6.9129
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G152319_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.14.6e-094082347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                       +WT +E+e + +a +q G++ +++I ++++  +   q++++++ +
  GRMZM2G152319_P02 40 AWTHQEEENFFNALRQVGKN-FDKITHRVQ-SKNKDQVRHYYYRL 82
                       6*****************99.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.48E-103586IPR009057Homeodomain-like
PROSITE profilePS5129312.8523687IPR017884SANT domain
SMARTSM007178.0E-73785IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.0E-53985IPR009057Homeodomain-like
PfamPF002494.4E-74082IPR001005SANT/Myb domain
CDDcd001671.85E-64083No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 746 aa     Download sequence    Send to blast
MCTRMSFTGS APESSDPNKQ PVFALCLIHV AKKQTRQWAA WTHQEEENFF NALRQVGKNF  60
DKITHRVQSK NKDQVRHYYY RLVRRMKKLL GPRFSLDAKN SKDTIAAMLR WWSLLEKFSC  120
SASKLHLKPR RFKTFVEALG KQLLKDRNKS RKKHSRVDMC ISSPSPVISK APGDETPPVK  180
FLSIDSQNGS RVASPKGTIF KRIAEPISNK SGTTKGDLSA TRTVKQKRKA GGAVASAAYK  240
KWERAAMAGV SLVADAAEEL ERNTINPGML CNVDARTLTS SSDRLSTGDG ISTNHMKETD  300
SQAPVKLKLQ LFPINEATRK ALEKDDHNPH LELTLSSRKK ISSVLEHLNR KWGNSNIASG  360
ELILFPYCAN QEDLATYQRW TTRDTVAVAD VFLSVNSPSV FRLRYGWFSL VELGAGVSDI  420
SLTHFEDCMR PEVIQVKSPS GDKACVQKDG TLLSNCTHES YPCSSMLLHM TPSSTGKNSE  480
LPDQPANVPH SRFGSQKQVQ VPVTQAFEDD QGMNCVAISE VEWADTLTDI SVEHLLTEAS  540
KDLDCVGTSV KDPLFLENPC SYDSFDAVVA LHASRYQASE QPAHAPHSNI WGAEETCDEF  600
SFNLSASRKQ EGSNTSSSSP DTDNEVHPSN SEGFRGFLQD LTGRETDADN PCNDDAKDEE  660
EFYAKSPPRN DKTNELKDQP LADIYWPDSL GPLDLDIPAV RYQTDDILIG DSQSSWNWNR  720
LMANSLDAFR NLSFFSDKND SIPSIM
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.30790.0aerial organ| embryo| endosperm| meristem| ovary| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G152319
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G152319_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0666200.0BT066620.1 Zea mays full-length cDNA clone ZM_BFb0040M22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001348894.10.0uncharacterized protein LOC100383221
TrEMBLA0A060D3G40.0A0A060D3G4_MAIZE; MYB-related transcription factor (Fragment)
STRINGGRMZM2G152319_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54783643
Representative plantOGRP21641015
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36960.31e-164TSL-kinase interacting protein 1