PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G152319_P01 | ||||||||
Common Name | LOC100383221, ZEAMMB73_750509 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | MYB_related | ||||||||
Protein Properties | Length: 716aa MW: 80014.9 Da PI: 7.1527 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.2 | 4.4e-09 | 31 | 73 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT +E+e + +a +q G++ +++I ++++ + q++++++ + GRMZM2G152319_P01 31 AWTHQEEENFFNALRQVGKN-FDKITHRVQ-SKNKDQVRHYYYRL 73 6*****************99.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.91E-10 | 25 | 77 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 12.852 | 27 | 78 | IPR017884 | SANT domain |
SMART | SM00717 | 8.0E-7 | 28 | 76 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.9E-5 | 30 | 76 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.1E-7 | 31 | 73 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.33E-6 | 31 | 74 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0006310 | anatomy | tassel floret | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006341 | anatomy | primary shoot system | ||||
PO:0006354 | anatomy | ear floret | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0009066 | anatomy | anther | ||||
PO:0009074 | anatomy | style | ||||
PO:0009084 | anatomy | pericarp | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020104 | anatomy | leaf sheath | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0020148 | anatomy | shoot apical meristem | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0001094 | developmental stage | plant embryo coleoptilar stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007015 | developmental stage | radicle emergence stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007026 | developmental stage | FL.00 first flower(s) open stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007094 | developmental stage | LP.01 one leaf visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007112 | developmental stage | 1 main shoot growth stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage | ||||
PO:0021004 | developmental stage | inflorescence initiation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 716 aa Download sequence Send to blast |
MCTRMSFTGS APESSDPNKQ PAKKQTRQWA AWTHQEEENF FNALRQVGKN FDKITHRVQS 60 KNKDQVRHYY YRLVRRMKKL LGPRFSLDAK NSKDTIAAML RWWSLLEKFS CSASKLHLKP 120 RRFKTFVEAL GKQLLKDRNK SRKKHSRVDM CISSPSPVIS KAPGDETPPV KFLSIDSQNG 180 SRVASPKGTI FKRIAEPISN KSGTTKGDLS ATRTVKQKRK AGGAVASAAY KKWERAAMAG 240 VSLVADAAEE LERNTINPGM LCNVDARTLT SSSDRLSTGD GISTNHMKET DSQAPVKLKL 300 QLFPINEATR KALEKDDHNP HLELTLSSRK KISSVLEHLN RKWGNSNIAS GELILFPYCA 360 NQEDLATYQR WTTRDTVAVA DVFLSVNSPS VFRLRYGWFS LVELGAGVSD ISLTHFEDCM 420 RPEVIQVKSP SGDKACVQKD GTLLSNCTHE SYPCSSMLLH MTPSSTGKNS ELPDQPANVP 480 HSRFGSQKQV QVPVTQAFED DQGMNCVAIS EVEWADTLTD ISVEHLLTEA SKDLDCVGTS 540 VKDPLFLENP CSYDSFDAVV ALHASRYQAS EQPAHAPHSN IWGAEETCDE FSFNLSASRK 600 QEGSNTSSSS PDTDNEVHPS NSEGFRGFLQ DLTGRETDAD NPCNDDAKDE EEFYAKSPPR 660 NDKTNELKDQ PLADIYWVLD EIIMFFCTGI ILAELTFFSF LGSLIHSDHW TWTYRP |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.3079 | 0.0 | aerial organ| embryo| endosperm| meristem| ovary| shoot| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G152319 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in flowers, roots and leaves. {ECO:0000269|PubMed:15047893}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G152319_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728424 | 0.0 | KJ728424.1 Zea mays clone pUT6729 MYB-related transcription factor (MYBR54) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001348894.1 | 0.0 | uncharacterized protein LOC100383221 | ||||
Swissprot | Q8LJT8 | 1e-148 | TKI1_ARATH; TSL-kinase interacting protein 1 | ||||
TrEMBL | A0A060D3G4 | 0.0 | A0A060D3G4_MAIZE; MYB-related transcription factor (Fragment) | ||||
STRING | GRMZM2G152319_P02 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36960.3 | 1e-149 | TSL-kinase interacting protein 1 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G152319_P01 |