PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G148561_P01
Common NameZEAMMB73_447009, Zm.108593
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family WRKY
Protein Properties Length: 306aa    MW: 31913.2 Da    PI: 10.1958
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G148561_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.15.6e-31241299259
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         D y+WrKYGqK++kgs++pr+YYrC+sa gCp++k+ver+a+dp ++++tYeg+H+h+
  GRMZM2G148561_P01 241 ADDYSWRKYGQKPIKGSPYPRGYYRCSSAkGCPARKHVERAADDPATLVVTYEGDHRHD 299
                        69*************************999****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.9E-5175220IPR018872Zn-cluster domain
PROSITE profilePS5081131.95235301IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.4E-31236300IPR003657WRKY domain
SuperFamilySSF1182903.01E-26237299IPR003657WRKY domain
SMARTSM007741.0E-36240300IPR003657WRKY domain
PfamPF031061.5E-26242298IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MAVDLMSCGG GGAYEHLAFQ EAAAAGLRSL ELLASSLSPC AAGRAESPPL GQIADQAVSR  60
FRRVINLLDR TGHARFRRAP AAAAKPIGMT ETEAALPPAS GRQAVAVEPA QKTEPAQKTA  120
LTLDFAKPAP APAVSATSTS FLSSVTAGGE ASKGCSLAAV SSGKPPLPKR KLPPCAAAVP  180
HHHQHQAHHP HPAERCHCSS KKKRARHGML SRRTVRVPAA AAAAGSQPPH PHAPASSDIP  240
ADDYSWRKYG QKPIKGSPYP RGYYRCSSAK GCPARKHVER AADDPATLVV TYEGDHRHDA  300
AAGHAP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-212382991575Probable WRKY transcription factor 4
2lex_A1e-212382991575Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1085930.0cell culture| meristem| ovary
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G148561
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G148561_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9720240.0EU972024.1 Zea mays clone 373577 WRKY25 - superfamily of TFs having WRKY and zinc finger domains mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001151725.20.0uncharacterized protein LOC100285361
TrEMBLK7TVL80.0K7TVL8_MAIZE; Putative WRKY DNA-binding domain superfamily protein
STRINGGRMZM2G148561_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61738171
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23320.12e-28WRKY DNA-binding protein 15